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Report for CCDS52215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52215.1 Public Mus musculus 7 Vmn2r60 23 108 98 CCDS HistoryNCBI Gene:637898Re-query CCDS DB by CCDS ID:52215.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233771.1 ENSMUSP00000156805.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233771.1Link to Ensembl Protein Viewer:ENSMUSP00000156805.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233771Re-query CCDS DB by Protein ID:ENSMUSP00000156805
Original member Current member NCBI NM_001105057.1 NP_001098527.1 Accepted alive Link to Nucleotide Sequence:NM_001105057.1Link to Protein Sequence:NP_001098527.1Re-query CCDS DB by Nucleotide ID:NM_001105057Re-query CCDS DB by Protein ID:NP_001098527Link to BLAST:NP_001098527.1

Chromosomal Locations for CCDS 52215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 42116471 42116679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42135575 42135866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42136276 42137082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42140899 42141126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42142191 42142314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42194875 42195776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTTCCGGATTTTTACCTTTGTGTTCCTGTATTTTCCCATTTTTATGTGTGCCTTTACTGACAATGAAT
GCTATGTAAAAAGCAATGATTATTTTTACCATGAAGGAGATGTGACAATTGGTGCACTTTTCCCTCTTCA
TATTTTGTACACAGGCAACACACTTACTGATCAATCTTTTCCATATAATTTTCAAGACTATCATATACAG
TATAAATTTAAGAACTACCTGTTTGTTCTGGCCCTGGTGTTTGCCATTGAAGAGATCAACAGGAACCCTG
ATCTTCTACCCAATATAACTATTGGATATGATATCTATAATATTCCATTTACTGAAAAGAATATTCTTTA
TAGTGCCTTTCTTTGGCGCACAGGGATAAGTCATCCCCTTCCTAACTGTGACTGTGGTCACAAGAGGACG
TCACCTGCTGTACTCACAGGACCATCATGGTCAGCATCTGCCCACATTGGAACATTTCTACAACTCTACA
AAATACCTCAGCTCACTTTTGGACCTTTTGATTCTATCTTGAATGACCGAGCTCAGTTTAATTCTCTTTA
CCAAATGGCCCCCGAAGACACATCTCTGCCATTTGCCATAGTCTTTTTGTTGCTTCATTTCAGCTGGTCC
TGGGTTGGTCTGATCCTCCCAGATGACCACAGAGGGACTCAGATTCTTTCAGACTTAAGAGAAAATATGG
AGAGTCATGGTATCTGCATAGCCTTTTTGAAAATGATCTCTGGCACATGGAATGCATTTTCCAATGCATT
ATGGAAAAGTATGGAGAAGATTGAGGAATCATCAGCAAATGTCATAGTTATTTATGGAGACATTATTTCT
GTACAAGGTTTAATGCTACATATTACACAACTGTTAGTGACATGGAAAGTCTGGGTCTTGAACTCTTCAT
GGGATGTTGATAGCCACTCTGATTATTTTATGGTAGAGTCATTTCATGGGAGTCTTATTTTCTCATACCA
CCATGAAGAGATGGTTGAGTTTATGAATTTTGTCCAAACAGTTAATCCTTACAAATACCCAGAGGACAAC
TATCTTCCTAAGTTTTGGCATTTGTTTTTCAAGTGCTCATTTTCTAAATTTGATTGTCAGCTTTTGGAGA
ACTGCCAACCCAATGCTTCTTTGGATTTACTTCCAAGACACCTTTTTGACCCAGCCATGAGTGAGGAAGG
CTACAATATATACAATGCTGTGTATGCTGTGGCCTATAGTCTCCATGAGATGAATCTTCAACAAATACAG
ACCCAACCATATGCCAATGGAGAAGAAATGGCATTCTCCCCCTGGCAGCTTCACCCTTTCCTAAAGAACA
CGATAATGAAAAGTCATGTGAGAGGAGACACAGTAACGCATGGGGGAAGAAACTTAGATGCACAGTATGA
CATTCTTAATTTTTGGAATTTTCCAAGTGGTCTTGGATTAAAGGTGAAAGTAGGAACCTATTCTCTAAGT
GCTCAGCACAGTCTACATTTCTCTATATGTGAACAGATGATACAGTGGCCTATAGGGTTTACAAAGATTC
CTCAGTCTGTGTGCAGTGAGAGCTGTAGGCCTGGATTCAGGAAAGCTGCCCAGGAAGGCAAGGCTGTCTG
CTGCTTTGATTGTATTCCCTGTGCCAACAATGAGATTTCTAATGAGACAGATATGGAGCAGTGTGTGCAG
TGTCCAGAAAGTCACTATGCCAACTCAGAGAAGAATCACTGCCTCCAGAAATCTGTGAGCTTTTTGGCCT
ATGAAGAGCCTTTGGGAATGGCACTCACCATCATAGCACTATGCTTCACTCTACTCACAGCTGTGGTTCT
TGTAGTCTTTGTGAAGCACAGAGACACACCCATTGTCAAGGCCAATAACAGGACTCTCAGCTACATCCTG
CTATTGACACTCTTCATCAGTTTCCTCAGTTCCTTGCTGTTTATTGGCCAGCCCAACACAACCACCTGCA
TCTTGCAGCAGACAGCAGTTGGAATTTTGTTCACTGTGGCTCTCTCCACAGTGTTGGCCAAAGCTATTAC
AGTGGTTATTGCATTCAAAGCCACTGTTCCAGCTAGAATGGTGAGATGGTTAATGGTATCAAGAGCCCCT
AATTTCATCATTCCCATCTGCACACTGATACAACTAATTATCTGTGGAATCTGGTTGGTTACCTCTCCAC
CCTTCATTGATCTAGATACTCATGCTGAACATGGTCACATCATCATTGTGTGCAACATGGGTTCAACAGT
TGCCTTCCACACTGTCCTGGGGTACCTCTGCTCCTTAGCACTTGGGAGCTACACCATGGCCTTCTTGTCC
AGGAATCTGCCTGACACCTTCAATGAAGCCAAGTTCCTGTCATTCAGCATGCAGATATTCTTCTGTGTTT
GGATCACTTTCCTCCCTGTCTACCATAGCACAAAGGGGAAGGTCATGGTGGCTATGGAAGTGTTTTGTAT
CTTGGCTTCCAATATAGCACTCCTTGGATTGATTTTTACCCCCAAGTGCTACATTATTTTGTTAAGGCCA
GAAAAAAACTCCTATCTTGGTGTCAGGCACAAAATCATTTAA

Translation (853 aa):
MFRIFTFVFLYFPIFMCAFTDNECYVKSNDYFYHEGDVTIGALFPLHILYTGNTLTDQSFPYNFQDYHIQ
YKFKNYLFVLALVFAIEEINRNPDLLPNITIGYDIYNIPFTEKNILYSAFLWRTGISHPLPNCDCGHKRT
SPAVLTGPSWSASAHIGTFLQLYKIPQLTFGPFDSILNDRAQFNSLYQMAPEDTSLPFAIVFLLLHFSWS
WVGLILPDDHRGTQILSDLRENMESHGICIAFLKMISGTWNAFSNALWKSMEKIEESSANVIVIYGDIIS
VQGLMLHITQLLVTWKVWVLNSSWDVDSHSDYFMVESFHGSLIFSYHHEEMVEFMNFVQTVNPYKYPEDN
YLPKFWHLFFKCSFSKFDCQLLENCQPNASLDLLPRHLFDPAMSEEGYNIYNAVYAVAYSLHEMNLQQIQ
TQPYANGEEMAFSPWQLHPFLKNTIMKSHVRGDTVTHGGRNLDAQYDILNFWNFPSGLGLKVKVGTYSLS
AQHSLHFSICEQMIQWPIGFTKIPQSVCSESCRPGFRKAAQEGKAVCCFDCIPCANNEISNETDMEQCVQ
CPESHYANSEKNHCLQKSVSFLAYEEPLGMALTIIALCFTLLTAVVLVVFVKHRDTPIVKANNRTLSYIL
LLTLFISFLSSLLFIGQPNTTTCILQQTAVGILFTVALSTVLAKAITVVIAFKATVPARMVRWLMVSRAP
NFIIPICTLIQLIICGIWLVTSPPFIDLDTHAEHGHIIIVCNMGSTVAFHTVLGYLCSLALGSYTMAFLS
RNLPDTFNEAKFLSFSMQIFFCVWITFLPVYHSTKGKVMVAMEVFCILASNIALLGLIFTPKCYIILLRP
EKNSYLGVRHKII


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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