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Report for CCDS57685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57685.1 Public Mus musculus 9 Impg1 23 108 98 CCDS HistoryNCBI Gene:63859Re-query CCDS DB by CCDS ID:57685.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113250.9 ENSMUSP00000108876.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113250.9Link to Ensembl Protein Viewer:ENSMUSP00000108876.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113250Re-query CCDS DB by Protein ID:ENSMUSP00000108876
Original member Current member NCBI NM_022016.3 NP_071299.3 Accepted alive Link to Nucleotide Sequence:NM_022016.3Link to Protein Sequence:NP_071299.3Re-query CCDS DB by Nucleotide ID:NM_022016Re-query CCDS DB by Protein ID:NP_071299Link to BLAST:NP_071299.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071299.3 798 Q8R1W8-1 798 100% 0 0

Chromosomal Locations for CCDS 57685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 80314371 80314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80316114 80316180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80322790 80322985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80341864 80342083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80345061 80345605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80378430 80378508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80379951 80380021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80381633 80381877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80383517 80383537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80386882 80386940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80394058 80394210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80398352 80398455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80404741 80404805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80434997 80435025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80435299 80435465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80440653 80440883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80465223 80465289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGAATTTGCAAATTAAACATGCTATCTTTGTTTTGGGGATTTTTCTCCAAGTTCAAGGAATCAAAGATA
CCTCTATTAAAATATTCAGTTCTGAAATTAAAAACATAGACAAAACCCCAAGAATCGAAACAATTGAAAG
TACTTCAACAGTGCACAAAGTGTCAACCATGAAACGAATATTCGATTTGCCAAAGCTTCGAACCAAAAGA
TCAGCACTTTTCCCAGCTGCTAACATCTGTCCACAGGAATCCTTGAGACAGATTTTAGCAAGTCTTCAAG
AATATTATAGACTGAGAGTATGTCAAGAAGTCGTGTGGGAAGCATATCGTATCTTTCTGGACCGAATTCC
TGACACAGAGGAATATCAAGACTGGGTCAGCCTCTGCCAGAAAGAAACCTTCTGCCTCTTTGACATTGGG
AAAAACTTCAGCAACTCCCAGGAGCACCTAGATCTTCTTCAGCAGAGAATAAAACAGAGAAGCTTCCCTG
GGAGGAAAGATGAGACAGCCTCCATGGAGACACTGGAAGCACCTACTGAAGCCCCTGTGGTACCCACAGA
TGTTTCCAGGATGTCCCTGGGGCCCTTCCCACTTCCTTCTGATGACACAGACCTCAAGGAGATTCTCAGT
GTCACCCTCAAGGACATTCAAAAGCCCACAACAGAAAGTAAAACAGAACCTATTCATGTGTCTGAATTCT
CATCAGAGGAGAAGGTGGAATTCAGCATCTCTCTGCCAAACCACAGGTTCAAGGCAGAGCTCACCAACTC
TGGGTCACCATACTACCAGGAACTGGTGGGACAGTCCCAACTGCAGTTGCAAAAGATATTTAAGAAACTT
CCAGGATTCGGAGAAATCCGTGTATTAGGATTTAGACCAAAGAAAGAAGAAGATGGTTCAAGCTCCACAG
AAATACAGCTTATGGCCATCTTTAAGAGGGACCATGCAGAAGCAAAAAGCCCTGATAGTCATCTACTGTC
TCTTGATTCCAACAAAATTGAAAGTGAAAGAATCCATCATGGAGTCATAGAAGACAAACAACCAGAAACC
TACCTCACAGCTACAGACCTCAAAAAACTCATCATACAACTACTAGATGGAGACCTGTCCTTGGTAGAAG
GGAAAATTCCATTCGGTGATGAAGTTACTGGGACACTCTTCAGACCTGTCACTGAACCAGATCTGCCCAA
GCCCCTTGCTGATGTCACAGAGGATGCCACTTTGAGTCCAGAACTTCCTTTCGTTGAGCCTAGGCTTGAG
GCAGTGGACAGAGAAGGATCTGAGCTGCCTGGAATGTCCTCCAAAGACAGTTCTTGGTCTCCACCTGTAT
CAGCCTCAATTTCCCGATCAGAAAATCTACCTTCGTTTACACCTAGCATCTTCTCTCTAGATGCTCAAAG
CCCCCCTCCCTTGATGACCACTGGCCCAACAGCACTCATCCCCAAGCCCACTCTCCCCACTATCGATTAT
TCTACCATCCGCCAATTGCCTCTGGAATCGTCACATTGGCCTGCATCCTCCAGTGACAGAGAGCTGATCA
CAAGCAGCCATGACACAATCCGAGACCTAGATGGCATGGATGTGTCTGACACGCCAGCCTTGTCAGAAAT
ATCAGAACTGAGTGGATACGATTCTGCCTCGGGTCAGTTCTTGGAGATGACCACACCCATCCCAACAGTA
CGGTTCATCACCACCAGCTCCGAGACCATTGCCACCAAGGGCCAGGAGCTAGTGGTATTCTTCAGCCTGC
GTGTTGCTAACATGCCGTTCTCCTATGACCTGTTCAACAAGAGTTCTCTGGAGTATCAAGCCCTGGAACA
ACGATTCACAGACCTGCTGGTTCCCTATCTACGATCGAATCTTACGGGATTTAAGCAACTGGAAATACTC
AGCTTCAGAAACGGAAGTGTGATCGTGAACAGCAAAGTGCGGTTTGCAAAGGCGGTACCCTACAACCTCA
CCCAGGCCGTGCGCGGGGTCTTGGAGGATCTTCGGTCCACCGCAGCTCAAGGGCTCAATCTGGAAATCGA
AAGCTACTCCCTCGACATTGAACCAGCTGATCAGGCGGATCCCTGCAAACTCCTAGACTGTGGCAAATTT
GCCCAGTGTGTAAAGAATGAGTGGACAGAGGAAGCAGAGTGTCGCTGCAGACAGGGACATGAGAGCCACG
GGACCCTGGACTACCAGACCCTGAACCTCTGTCCCCCTGGAAAGACTTGTGTGGCCGGCCGAGAACAAGC
AACTCCATGCAGGCCACCAGATCACTCTACAAACCAAGCTCAGGAACCTGGTGTTAAAAAGCTACGTCAG
CAAAATAAGGTAGTCAAGAAAAGAAATTCTAAACTATCAGCTATAGGATTTGAAGAATTTGAAGACCAGG
ACTGGGAGGGAAATTAA

Translation (798 aa):
MNLQIKHAIFVLGIFLQVQGIKDTSIKIFSSEIKNIDKTPRIETIESTSTVHKVSTMKRIFDLPKLRTKR
SALFPAANICPQESLRQILASLQEYYRLRVCQEVVWEAYRIFLDRIPDTEEYQDWVSLCQKETFCLFDIG
KNFSNSQEHLDLLQQRIKQRSFPGRKDETASMETLEAPTEAPVVPTDVSRMSLGPFPLPSDDTDLKEILS
VTLKDIQKPTTESKTEPIHVSEFSSEEKVEFSISLPNHRFKAELTNSGSPYYQELVGQSQLQLQKIFKKL
PGFGEIRVLGFRPKKEEDGSSSTEIQLMAIFKRDHAEAKSPDSHLLSLDSNKIESERIHHGVIEDKQPET
YLTATDLKKLIIQLLDGDLSLVEGKIPFGDEVTGTLFRPVTEPDLPKPLADVTEDATLSPELPFVEPRLE
AVDREGSELPGMSSKDSSWSPPVSASISRSENLPSFTPSIFSLDAQSPPPLMTTGPTALIPKPTLPTIDY
STIRQLPLESSHWPASSSDRELITSSHDTIRDLDGMDVSDTPALSEISELSGYDSASGQFLEMTTPIPTV
RFITTSSETIATKGQELVVFFSLRVANMPFSYDLFNKSSLEYQALEQRFTDLLVPYLRSNLTGFKQLEIL
SFRNGSVIVNSKVRFAKAVPYNLTQAVRGVLEDLRSTAAQGLNLEIESYSLDIEPADQADPCKLLDCGKF
AQCVKNEWTEEAECRCRQGHESHGTLDYQTLNLCPPGKTCVAGREQATPCRPPDHSTNQAQEPGVKKLRQ
QNKVVKKRNSKLSAIGFEEFEDQDWEGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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