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Report for CCDS48393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48393.1 Public Mus musculus 1 Niban1 23 108 98 CCDS HistoryNCBI Gene:63913Re-query CCDS DB by CCDS ID:48393.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148810.7 ENSMUSP00000115822.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148810.7Link to Ensembl Protein Viewer:ENSMUSP00000115822.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148810Re-query CCDS DB by Protein ID:ENSMUSP00000115822
Original member NCBI NM_022018.3 NP_071301.2 Updated not alive Link to Nucleotide Sequence:NM_022018.3Link to Protein Sequence:NP_071301.2Re-query CCDS DB by Nucleotide ID:NM_022018Re-query CCDS DB by Protein ID:NP_071301
Current member NCBI NM_022018.4 NP_071301.2 Accepted alive Link to Nucleotide Sequence:NM_022018.4Link to Protein Sequence:NP_071301.2Re-query CCDS DB by Nucleotide ID:NM_022018Re-query CCDS DB by Protein ID:NP_071301Link to BLAST:NP_071301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071301.2 926 Q3UW53 926 100% 0 0

Chromosomal Locations for CCDS 48393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151571530 151571584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151636404 151636534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151641428 151641559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151644875 151644989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151649279 151649443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151689519 151689634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151695690 151695794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151696125 151696287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151700109 151700296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151703702 151703863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151705987 151706097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151709097 151709204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151715660 151715771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151717229 151718346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGGCGGCTCAGCTTCCAGCCAGCTGGACGAGGGCAAGTGCGCCTACATCCGAGGGAAAACTGAGGCTT
CTATCAAAAACTTCAGCCCCTACTACAGCCGGCAGTATTCTGTAGCTTTCTGCAATCATGTGCGCAGCGA
GGTGGAGCAGCAAAGAGATTTAACGTCACAATTTCTGAAGACCAAGCCCCCACTGGAACCAGGAACGGTT
TTGTATGAAGCTGAGCTCTCCCAGTTTGCTGAAGACATCAGGAAATGGAAAGACAGATACATTGTGATTA
AAAACGATTTTGCTGTGGAAAGCTATGAGAGCAAAGAGGCCTATCAGAGAGGAGCTGTTCCTAAAAGCAG
GATTCTTCCAGCCGGTGGCAAGGTGTTAACCTCAGAAGAGGAATATAGTCTCTTATCTGATAAGCATTTC
CCAGACCCCACTGCTTCCAGCGAGAAGAACTCTCAGCCCTTTGTGCTCCTCCCTAAGGCATTCCCAGTGT
ACCTGTGGCAGCCTTACCTCAGGCATGGCTACTTCTGTTTCCATGAGGCCGCCGAACAGCAGAAGTTCAG
CGCTCTTCTCAATGACTGCATCAGACACCTGAACCACGATTACATGAAGCAGACAACATTTGAAGCCCAA
GCCTTTTTAGAAGCTGTGCAGTTCTTCCGGCAGGAGAAGGGTCACTACGGCTCATGGGAAATGACCACCG
GGGATGAAGTCCAGGTCCTGAGTAAGCTGGTGATGGAGGAGCTCCTGCCGACCCTCCAGACTGACCTGCT
GCCTAAACTGAAGGGGAAGAAGAATGACAGAAAGAGGGCCTGGTTTGGACTCCTGGAGGAAGCCTACAAT
CTGGTTCAGCACCAAGTTTCAGAAGGATTAAATGCCTTGAAGGAGGAGTGCAGAGCTCTGACAAAGGACC
TGGAAGGGACCATCCGCTCAGACATGGATCAGATTGTGACCTCAAAGAACTTTCTAACTGGGAAGATCCG
AGCAATGGTGGCTCAGCCAGCCGAGCAGTGCTGTGGGGAGAGCGTGCAGCCCTTCCTGGCGTCCATTCTG
GAGGAGCTAATGGGGCCAGTGAGCTCTGGCTTCAGTGAAGTCCGTGCACTTTTCGAAAAAGAAGTAGATG
AACTCAGTCAGAGCTTCCATGCTACCCAGGACAGTGCCCAGCTGAAGGAGGGCCTACAGCAGCTAATGAA
GCTTCCTCTGGATTCTGTGAAGATGGAGCCTTGCTATACTAAAGTCACCCTGCTTCCAGAGCGCCTGCTG
GACCTCCAGAGCCGCTTCAGGTTCCCTCACGTTGACCTGGTGGTCCAGAGGACTCAGAACTACATGCAAG
AGCTCATGGAGAATGCTGTGTTCACGTTTGAGCAGTTGCTCTCCCCATATCTCCAAGGAGAGGCTTCCAG
AATACCAGTGGCCATCGAGAAGGTTAAGCTCCGTGTCTTAAAGCAATATGATTACGACAGCAGCACCATC
CGGAAGAAGATCTTCCAGGAGGCATTGATTCAAATCACACTGCCCACTGTGCAGAAGGCGCTGGCATCCA
CATGCAAACCAGAGCTTCAGAAATATGAGCAGTTCATCTTTGCAGATCATACCAACATGATCCACGTTGA
GAACGTCTATGAAGAGATTTTGTATGAGATCCTCCTCGATGAGACCCTGAAAGTGATAACGGAGGCAGCC
ATCTTGAAGAAACACAACTTATTTGAAGACAACATGGCCTTGCCCAGTGAAAGTGTGTCCAGCCTGACAG
ACCTCAAAACCGCCATGGGGTCAAACCAGGCCAGCCCAGCCAGAAGAGTATCTGCCATTCTCCCAGGAGC
TCCAGATAATGAGCTCCCAAGTAATGAAGTGTTCCAGGAGCCAGAGGAAAAGAAGGAGCAGCCTGGGGTG
CCTGGCTCACTGGCCATCTCTGCGTCCAGCTGTCCTTCAGGTGGGGATGGGCAGGTGTCTGTGGATCACT
CTGCTGGGGGCCCTCTCACTGTAGAGAATACAGCAGGACCCCTCAGCTCACACTTGTCAGAGGTGGAAGC
TGGGGGGACCCTTAAAGATGAGGAACCAACCTGCCAAAGTCCAGAGCCTAGCGCTGTGCCAGGGTCCCTG
AAGGAACTGAAAAAGTTGTTGACTGTGACGGTGTCCGTAGAGTCTGCCCCGGTGGTTGAAAATGATATCC
ACAACGGGACACCTGTTCCCCAAGAGAATATAAAAGAAGAAGAAAGCAAGATCCACCCAGAAGCCAGCCA
CCCAGCTGCCATCCAGCAGGACAGCTGTGAAGAAAGGGAAGTCAGAGAGAAGGAGGCCCAGCCTTTGGAA
GCTGAGGCTCCTGGGGTGGACTTGGGGATACTGCCAGAGGGTAGAGGCTCTACCTCTCAGTCCACCAGTG
GGGGGCTCACTGAGAACACCAGCTGTCCAGGCCCCATAGAGGAGCCATTTGAGGCTCAAGAGCCAGCAGA
GAAGGTGCTCCCAGCCATAGTTTCTACAGAGGACAGCCCCCAGGCAGGAGGTGAGGCTGAGCATTCGGTG
ACAGTCACACCTCAAGAAGATGCCACGTTAAGCTCTAACCCCATCTGTCCCATGGAGAGCAATGAGGTGG
CCCAGGCTTCTGGGGATCAAGAAGTGCTGGGAGGGGAGGATAGCTCAGCCCTTGGTATGGATACAGAGCA
AGTCAATGATACTCATGAGCATGCTTGTCAGTGGCTGGTGGAGGATACCCTGAGCACTGACATCCTAGCC
GTACATGATTTTGATGTGAGCTCCCCAGAGCAGCCCTCAGAGGAGTGGTAG

Translation (926 aa):
MGGSASSQLDEGKCAYIRGKTEASIKNFSPYYSRQYSVAFCNHVRSEVEQQRDLTSQFLKTKPPLEPGTV
LYEAELSQFAEDIRKWKDRYIVIKNDFAVESYESKEAYQRGAVPKSRILPAGGKVLTSEEEYSLLSDKHF
PDPTASSEKNSQPFVLLPKAFPVYLWQPYLRHGYFCFHEAAEQQKFSALLNDCIRHLNHDYMKQTTFEAQ
AFLEAVQFFRQEKGHYGSWEMTTGDEVQVLSKLVMEELLPTLQTDLLPKLKGKKNDRKRAWFGLLEEAYN
LVQHQVSEGLNALKEECRALTKDLEGTIRSDMDQIVTSKNFLTGKIRAMVAQPAEQCCGESVQPFLASIL
EELMGPVSSGFSEVRALFEKEVDELSQSFHATQDSAQLKEGLQQLMKLPLDSVKMEPCYTKVTLLPERLL
DLQSRFRFPHVDLVVQRTQNYMQELMENAVFTFEQLLSPYLQGEASRIPVAIEKVKLRVLKQYDYDSSTI
RKKIFQEALIQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYEEILYEILLDETLKVITEAA
ILKKHNLFEDNMALPSESVSSLTDLKTAMGSNQASPARRVSAILPGAPDNELPSNEVFQEPEEKKEQPGV
PGSLAISASSCPSGGDGQVSVDHSAGGPLTVENTAGPLSSHLSEVEAGGTLKDEEPTCQSPEPSAVPGSL
KELKKLLTVTVSVESAPVVENDIHNGTPVPQENIKEEESKIHPEASHPAAIQQDSCEEREVREKEAQPLE
AEAPGVDLGILPEGRGSTSQSTSGGLTENTSCPGPIEEPFEAQEPAEKVLPAIVSTEDSPQAGGEAEHSV
TVTPQEDATLSSNPICPMESNEVAQASGDQEVLGGEDSSALGMDTEQVNDTHEHACQWLVEDTLSTDILA
VHDFDVSSPEQPSEEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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