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Report for CCDS18958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18958.1 Public Mus musculus 4 Ube4b 23 108 98 CCDS HistoryNCBI Gene:63958Re-query CCDS DB by CCDS ID:18958.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103212.9 ENSMUSP00000099501.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103212.9Link to Ensembl Protein Viewer:ENSMUSP00000099501.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103212Re-query CCDS DB by Protein ID:ENSMUSP00000099501
Original member NCBI NM_022022.3 NP_071305.2 Updated not alive Link to Nucleotide Sequence:NM_022022.3Link to Protein Sequence:NP_071305.2Re-query CCDS DB by Nucleotide ID:NM_022022Re-query CCDS DB by Protein ID:NP_071305
Current member NCBI NM_022022.4 NP_071305.2 Accepted alive Link to Nucleotide Sequence:NM_022022.4Link to Protein Sequence:NP_071305.2Re-query CCDS DB by Nucleotide ID:NM_022022Re-query CCDS DB by Protein ID:NP_071305Link to BLAST:NP_071305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071305.2 1173 Q9ES00 1173 100% 0 0

Chromosomal Locations for CCDS 18958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149329676 149329737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149330191 149330337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149331323 149331497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149335112 149335303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149337385 149337519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149342879 149343023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149344515 149344641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149347927 149348162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149350658 149350756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149351458 149351585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149352928 149353027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149355418 149355556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149357625 149357823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149359197 149359310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149360278 149360376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149360460 149360576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149361284 149361340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149365454 149365537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149368301 149368415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149371159 149371259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149372828 149372969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149381183 149381411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149383738 149383882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149385125 149385212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149387081 149387216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149398599 149398785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149425882 149425905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3522 nt):
ATGGAGGAGCTGAGCGCTGACGAGATTCGACGGAGGCGCCTGGCACGACTTGCTGGTGGACAGACCTCCC
AGCCGACCACCCCGCTTACATCTCCCCAGAGGGAGAACCCTCCGGGACCTCCAATAGCTGCATCAGCCCC
AGGCCCCTCCCAGAGTCTTGGTCTCAATGTCCACAACATGACCCCAGCTACCTCCCCCATAGGTGCAGCA
GGAGTTGCCCATCGGAGCCAGAGCAGCGAAGGCGTCAGTTCTCTCAGCAGCTCACCTTCCAACAGCCTTG
AGACACAGTCTCAGTCCCTCTCCCGTTCCCAGAGCATGGATATTGACGGTGTCTCCTGTGAGAAAAGCAT
GTCCCAGGTGGATGTGGATTCGGGAATTGAGAATATGGAGGTGGACGAGAACGACCGAAGAGAAAAACGG
AGCCTGAGTGACAAGGAGCCTTCTTCAGGTCCTGAGGTGTCTGAAGAGCAAGCCTTACAGCTGGTCTGTA
AGATCTTCCGTGTCTCCTGGAAGGACCGCGACAGAGATGTCATCTTCCTTTCTTCTCTCTCTGCGCAGTT
TAAACAGAACCCAAAAGAAGTGTTCTCTGATTTTAAGGATCTGATTGGCCAGATTTTAATGGAAGTACTG
ATGATGTCAACTCAGACACGAGATGAAAATCCATTTGCCAGTCTGACAGCCACATCCCAGCCCATCGCCA
CGGCAGCTCGGTCACCAGACCGCAATCTCATGCTGAACACTGGCTCCAGTTCAGGAACAAGCCCCATGTT
CTGCAACATGGGCTCCTTCAGCACCAGCTCGTTGTCTAGTTTGGGAGCCTCTGGTGGAGCAAGTAACTGG
GATTCGTACAGTGACCATTTCACCATTGAAACCTGCAAAGAGACGGACATGCTGAACTACCTCATCGAGT
GTTTTGACCGAGTTGGAATAGAGGAAAAAAAAGCACCAAAGATGTGCAGCCAGCCAGCAGTCAGCCAGCT
TCTGAGCAACATCCGCTCGCAGTGCATCTCCCACACCGCACTAGTGCTACAAGGTTCCCTCACACAGCCC
AGGTCCTTGCAACAGCCATCCTTCCTCGTGCCGTACATGCTCTGCAGGAACCTCCCGTACGGCTTCATTC
AAGAGCTGGTGAGGACCACTCACCAGGATGAAGAGGTGTTCAAGCAGATCTTTATCCCCATTTTACAAGG
CCTGGCGCTGGCTGCCAAAGAGTGCTCCTTGGAAAGCGACTACTTTAAGTACCCCCTCATGGCACTGGGT
GAACTCTGTGAAACCAAGTTTGGGAAGACACACCCTATGTGCAATTTGGTCGCTTCTTTACCCCTGTGGT
TGCCGAAGTCCTTAAGCCCTGGTTCTGGGCGGGAGCTGCAGAGACTCTCCTACTTAGGGGCCTTCTTTAG
CTTCTCAGTCTTCGCAGAGGACGATGCAAAGGTGGTTGAGAAATACTTCTCAGGGCCTGCCATTACCCTG
GAGAACACACGCGTGGTCAGCCAGTCACTACAGCATTACCTGGAGCTGGGACGGCAAGAACTTTTCAAGA
TTCTACATAGTATTTTGTTAAATGGCGAAACTCGTGAAGCGGCTCTCAGCTACATGGCGGCCCTTGTCAA
TGCCAACATGAAGAAAGCCCAGATGCAGGCAGATGATCGGTTGGTGTCTACAGACGGGTTTATGCTGAAT
CTCCTTTGGGTCCTGCAGCAGCTAAGTACAAAAATCAAGTTAGAAACAGTTGACCCCACTTACATATTCC
ACCCAAGATGTCGGATCACTCTCCCGAATGATGAGACACGGATAAATGCAACGATGGAGGATGTGAATGA
GCGGCTGACAGAGCTCTATGGTGATCAGCCTCCATTTTCTGAGCCAAAATTCCCTACGGAATGTTTCTTT
CTCACCCTGCATGCTCATCACCTCTCTATTCTGCCTAGTTGTCGTCGCTACATTCGCCGACTTCGAGCCA
TCCGCGAGCTCAATAGAACCGTGGAAGATTTGAAAAATAATGAAAGCCAGTGGAAAGATTCCCCACTGGC
CACCAGACACCGTGAAATGCTGAAGCGCTGTAAAACTCAGCTTAAGAAACTGGTACGGTGCAAGGCCTGT
GCTGACGCTGGCTTACTTGACGAGAGCTTCCTAAGAAGATGCCTGAATTTTTATGGCCTTCTCATTCAGC
TGATGCTGCGCATCCTGGACCCTGCATATCCTGACGTAACACTGCCTTTGAATTCAGAAGTCCCCAAGGT
ATTTGCAGCATTGCCTGAGTTTTATGTCGAAGATGTTGCTGAATTTTTATTTTTTATTGTACAATACTCT
CCTCAGGTGCTTTATGAGCCCTGCACTCAGGACATTGTCATGTTCCTCGTTGTGATGCTGTGCAACCAGA
ACTACATCCGAAACCCTTACCTAGTGGCCAAGCTGGTGGAGGTCATGTTCATGACCAACCCTTCTGTCCA
GCCGAGAACTCAGAAGTTCTTTGAGATGATTGAGAACCATCCTCTCTCTACCAAACTGCTGGTGCCGTCC
CTCATGAAGTTCTATACAGATGTCGAGCATACTGGAGCCACCAGCGAGTTCTATGACAAGTTCACAATTC
GCTATCACATTAGCACTATTTTTAAAAGCCTTTGGCAAAACATAGCTCACCATGGCACCTTCATGGAGGA
GTTCAATTCTGGAAAGCAGTTCGTTCGGTATATCAATATGCTAATAAATGACACGACCTTTTTACTGGAC
GAAAGTCTGGAGTCTCTGAAGCGGATCCATGAAGTGCAAGAAGAGATGAAGAACAAAGAACAGTGGGACC
AGCTGCCTCGGGATCAGCAGCAGGCCCGGCAGTCTCAGCTTGCTCAGGACGAGCGTGTTTCCCGTTCTTA
TCTTGCCCTGGCAACTGAAACCGTGGACATGTTCCATCTCCTCACCAAGCAAGTCCAGAAGCCGTTCCTG
AGGCCAGAGCTTGGTCCCCGATTAGCAGCCATGCTGAACTTTAACCTGCAGCAGCTCTGCGGACCCAAGT
GCCGGGACCTGAAAGTTGAAAACCCAGAGAAGTATGGTTTTGAGCCAAAGAAGCTGTTGGACCAACTGAC
AGATATTTATTTACAATTGGACTGTGCTCGCTTTGCTAAAGCCATCGCCGATGACCAGCGATCCTACAGC
AAGGAACTGTTTGAAGAAGTCATTTCAAAGATGCGGAAGGCGGGAATCAAATCCACCATCGCAATAGAGA
AGTTTAAACTTCTTGCAGAGAAAGTGGAGGAAATCGTGGCAAAGAATGCGCGGGCAGAAATAGACTACAG
CGATGCCCCGGACGAGTTCAGAGACCCTCTGATGGACACCCTGATGACCGATCCCGTGAGACTGCCCTCT
GGCACCGTCATGGACCGTTCTATCATCCTGCGGCATCTGCTCAACTCCCCCACCGACCCCTTCAACCGCC
AGATGCTGACTGAGAGCATGCTGGAGCCAGTGCCAGAGCTAAAGGAGCAGATTCAGGCCTGGATGAGAGA
GAAACAGAGCAGTGACCACTGA

Translation (1173 aa):
MEELSADEIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGAA
GVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQVDVDSGIENMEVDENDRREKR
SLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFLSSLSAQFKQNPKEVFSDFKDLIGQILMEVL
MMSTQTRDENPFASLTATSQPIATAARSPDRNLMLNTGSSSGTSPMFCNMGSFSTSSLSSLGASGGASNW
DSYSDHFTIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQP
RSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDYFKYPLMALG
ELCETKFGKTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAEDDAKVVEKYFSGPAITL
ENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAALVNANMKKAQMQADDRLVSTDGFMLN
LLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRINATMEDVNERLTELYGDQPPFSEPKFPTECFF
LTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKAC
ADAGLLDESFLRRCLNFYGLLIQLMLRILDPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQYS
PQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIENHPLSTKLLVPS
LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLD
ESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHLLTKQVQKPFL
RPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYS
KELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPS
GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSSDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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