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Report for CCDS25956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25956.1 Public Mus musculus 12 Sav1 23 108 98 CCDS HistoryNCBI Gene:64010Re-query CCDS DB by CCDS ID:25956.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021467.7 ENSMUSP00000021467.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021467.7Link to Ensembl Protein Viewer:ENSMUSP00000021467.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021467Re-query CCDS DB by Protein ID:ENSMUSP00000021467
Original member NCBI NM_022028.2 NP_071311.1 Updated not alive Link to Nucleotide Sequence:NM_022028.2Link to Protein Sequence:NP_071311.1Re-query CCDS DB by Nucleotide ID:NM_022028Re-query CCDS DB by Protein ID:NP_071311
Current member NCBI NM_022028.3 NP_071311.1 Accepted alive Link to Nucleotide Sequence:NM_022028.3Link to Protein Sequence:NP_071311.1Re-query CCDS DB by Nucleotide ID:NM_022028Re-query CCDS DB by Protein ID:NP_071311Link to BLAST:NP_071311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071311.1 386 Q8VEB2 386 100% 0 0

Chromosomal Locations for CCDS 25956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69966140 69966347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69969070 69969213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69975968 69976238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69984209 69984652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69986674 69986767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGCTGTCCCGCAAGAAAACCAAAAACGAGGTGTCTAAGCCGGCCGAGGTGCAGGGCAAGTACGTGAAGA
AGGAGACGTCGCCCCTGCTGCGGAATCTCATGCCTTCATTCATTCGGCACGGTCCAACAATTCCCAGACG
GACTGACCTCTGTCTTCCAGATTCAAGTGCTACTGCTTTCTCAGCTTCTGGAGATGGTGTAGTTTCAAGA
AACCAGAGTTTCCTGAGAACTGCAATTCAAAGGACACCTCATGAAGTAATGAGAAGAGAAAGCCACAGAC
TGTCTGCCCCTTCTTACCTTGTCAGGAGCCTAGCAGATGTCCCTCGAGAGTGTGGCTCATCACAGTCATT
TTTGACAGAAGTTAACTTTGCTGTTGAGAATGGAGACTCTGGCTCCCGATACTTCTTCTCAGATAACTTT
TTTGATGGACAGAGAAGGCGGCCACTTGGAGATCGTGCACAAGAAGATTACAGATATTATGAATACAACC
ATGATCTCTTCCAGAGGATGCCACAGAGTCAGGGGAGGCACACTTCAGGTATTGGGAGAGTCACGGCTAC
ATCTCTAGGGAATTTAACTAACCATGGATCTGAAGATTTACCCCTTCCTCCTGGCTGGTCTGTGGACTGG
ACAATGAGAGGGAGAAAATACTACATAGATCATAACACAAATACCACTCACTGGAGTCATCCCCTTGAAC
GAGAAGGACTTCCTCCTGGCTGGGAACGAGTAGAGTCATCAGAATTTGGAACCTATTACGTGGATCACAC
CAATAAAAGGGCTCAGTACAGGCACCCCTGTGCTCCGAGTGTACCTCGGTATGATCAGCCTCCACCCATC
ACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAG
AAATTCCTGACTGGCTTCAGGTTTATGCCCGAGCCCCTGTGAAATATGACCACATTCTGAAGTGGGAGCT
CTTCCAGCTGGCTGACCTGGACACGTACCAGGGAATGCTGAAGTTGCTCTTCATGAAGGAACTGGAGCAG
ATTGTGAAGTTGTACGAGGCCTACAGACAGGCTCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGC
AGTGGTATGCCCAGCAGCATGGCAAGACGTTCTTAAGTTAA

Translation (386 aa):
MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDLCLPDSSATAFSASGDGVVSR
NQSFLRTAIQRTPHEVMRRESHRLSAPSYLVRSLADVPRECGSSQSFLTEVNFAVENGDSGSRYFFSDNF
FDGQRRRPLGDRAQEDYRYYEYNHDLFQRMPQSQGRHTSGIGRVTATSLGNLTNHGSEDLPLPPGWSVDW
TMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPCAPSVPRYDQPPPI
TYQPQQTERNQSLLVPANPYHTAEIPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQ
IVKLYEAYRQALLTELENRKQRQQWYAQQHGKTFLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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