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Report for CCDS9854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9854.1 Public Homo sapiens 14 IRF2BPL 24 110 108 CCDS HistoryNCBI Gene:64207Re-query CCDS DB by CCDS ID:9854.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238647.5 ENSP00000238647.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238647.5Link to Ensembl Protein Viewer:ENSP00000238647.3Re-query CCDS DB by Nucleotide ID:ENST00000238647Re-query CCDS DB by Protein ID:ENSP00000238647
Original member Current member NCBI NM_024496.4 NP_078772.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024496.4Link to Protein Sequence:NP_078772.1Re-query CCDS DB by Nucleotide ID:NM_024496Re-query CCDS DB by Protein ID:NP_078772Link to BLAST:NP_078772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078772.1 796 Q9H1B7 796 100% 0 0

Chromosomal Locations for CCDS 9854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77025402 77027792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGTCGGCGGCGCAGGTGTCCTCGTCCCGGAGACAATCTTGCTACCTGTGCGACCTGCCCCGCATGCCCT
GGGCCATGATCTGGGACTTCTCGGAACCCGTATGCCGCGGTTGCGTCAACTACGAGGGCGCTGATCGCAT
CGAATTCGTGATCGAGACAGCGCGCCAGCTGAAGCGGGCGCACGGCTGCTTCCAGGACGGCCGCTCCCCC
GGGCCGCCGCCGCCCGTCGGGGTCAAGACAGTGGCCCTGTCGGCTAAGGAAGCGGCGGCGGCGGCGGCAG
CAGCGGCGGCCGCCGCCGCCGCCGCGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAGCTCAACCACGTTGATGGTTCCAGCAAGCCTGCGGTGCTG
GCGGCCCCGTCTGGCCTGGAGCGCTACGGCCTAAGCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTG
CGGTGGAACAGCGCAGCCGCTTCGAGTACCCGCCACCGCCGGTGAGCCTGGGAAGCAGCAGCCACACCGC
GCGACTGCCCAACGGCCTGGGGGGCCCAAACGGCTTCCCCAAACCAACACCAGAGGAGGGACCCCCAGAG
CTGAACCGTCAGAGCCCCAATTCTTCTTCAGCGGCGGCGTCGGTGGCGTCTCGGCGTGGAACGCACGGTG
GGCTGGTTACGGGGCTGCCCAACCCGGGGGGTGGCGGAGGCCCCCAGCTCACCGTGCCCCCCAACCTGCT
ACCGCAGACGCTGCTTAACGGCCCGGCCAGCGCTGCGGTACTCCCCCCACCCCCTCCCCACGCCCTGGGC
AGCCGTGGGCCCCCGACGCCTGCTCCCCCAGGGGCTCCTGGGGGCCCCGCTTGTCTCGGGGGTACCCCGG
GTGTATCGGCCACGTCGTCCTCCGCGTCGTCTTCGACCTCTTCGTCGGTGGCAGAGGTGGGCGTGGGTGC
TGGTGGTAAGAGGCCCGGCTCGGTGTCGAGCACAGACCAGGAGCGCGAGTTGAAGGAGAAGCAGCGCAAC
GCCGAGGCCCTGGCCGAGCTGAGCGAGAGCCTGCGCAACCGCGCCGAGGAGTGGGCCAGCAAGCCCAAGA
TGGTCCGCGACACGCTGCTCACGCTGGCAGGCTGCACGCCCTACGAGGTTCGCTTCAAGAAGGACCACTC
GCTGCTGGGCCGCGTTTTCGCCTTCGACGCCGTCTCCAAGCCCGGCATGGACTACGAATTGAAGCTGTTC
ATTGAGTACCCCACGGGCTCGGGCAACGTGTACTCCAGTGCATCTGGTGTGGCCAAGCAGATGTATCAGG
ACTGCATGAAGGACTTCGGCCGGGGCCTATCCTCGGGTTTCAAGTACCTGGAGTACGAAAAGAAGCACGG
CTCCGGGGACTGGCGCCTGCTTGGAGACCTGCTCCCCGAAGCCGTGCGCTTCTTCAAGGAGGGCGTGCCC
GGCGCCGACATGCTGCCCCAGCCCTACCTGGACGCCAGCTGTCCCATGCTGCCCACTGCTCTGGTGAGTC
TGAGCCGCGCCCCCAGCGCACCCCCGGGGACCGGGGCCTTGCCGCCCGCCGCGCCGTCGGGCCGGGGCGC
AGCCGCCAGCCTGCGCAAGAGAAAGGCCTCTCCGGAGCCCCCGGACTCAGCCGAGGGCGCGCTGAAGCTG
GGCGAGGAACAGCAGAGGCAGCAGTGGATGGCGAACCAGAGCGAGGCGCTGAAGCTCACCATGTCCGCCG
GGGGCTTCGCGGCGCCGGGGCACGCGGCGGGGGGTCCGCCTCCGCCGCCCCCACCTCTGGGACCCCATTC
CAACCGGACCACCCCACCTGAGTCAGCCCCCCAGAACGGTCCGTCCCCTATGGCCGCTCTCATGTCGGTG
GCAGATACTCTGGGCACAGCGCACTCGCCCAAGGATGGCAGTTCCGTGCACTCTACCACTGCGTCGGCGC
GGCGAAACAGCAGCAGCCCAGTCTCGCCGGCCTCCGTGCCGGGGCAGCGCCGCTTGGCATCACGTAACGG
GGACCTGAATTTACAGGTGGCGCCCCCGCCGCCTAGCGCCCACCCGGGCATGGACCAAGTGCACCCCCAA
AACATTCCGGATTCCCCCATGGCCAACAGCGGACCCCTCTGCTGCACCATTTGCCACGAACGTTTGGAGG
ATACGCATTTCGTTCAGTGCCCTTCCGTCCCCAGCCACAAATTTTGCTTCCCTTGCTCTAGAGAGAGTAT
CAAGGCCCAGGGGGCCACCGGCGAGGTGTATTGCCCCAGCGGAGAGAAATGCCCCCTAGTCGGGTCGAAT
GTACCTTGGGCCTTCATGCAGGGCGAAATCGCGACTATCTTAGCTGGGGATGTTAAAGTGAAAAAGGAGA
GAGACCCTTGA

Translation (796 aa):
MSAAQVSSSRRQSCYLCDLPRMPWAMIWDFSEPVCRGCVNYEGADRIEFVIETARQLKRAHGCFQDGRSP
GPPPPVGVKTVALSAKEAAAAAAAAAAAAAAAQQQQQQQQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVL
AAPSGLERYGLSAAAAAAAAAAAAVEQRSRFEYPPPPVSLGSSSHTARLPNGLGGPNGFPKPTPEEGPPE
LNRQSPNSSSAAASVASRRGTHGGLVTGLPNPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPPPHALG
SRGPPTPAPPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSSTDQERELKEKQRN
AEALAELSESLRNRAEEWASKPKMVRDTLLTLAGCTPYEVRFKKDHSLLGRVFAFDAVSKPGMDYELKLF
IEYPTGSGNVYSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSGDWRLLGDLLPEAVRFFKEGVP
GADMLPQPYLDASCPMLPTALVSLSRAPSAPPGTGALPPAAPSGRGAAASLRKRKASPEPPDSAEGALKL
GEEQQRQQWMANQSEALKLTMSAGGFAAPGHAAGGPPPPPPPLGPHSNRTTPPESAPQNGPSPMAALMSV
ADTLGTAHSPKDGSSVHSTTASARRNSSSPVSPASVPGQRRLASRNGDLNLQVAPPPPSAHPGMDQVHPQ
NIPDSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSN
VPWAFMQGEIATILAGDVKVKKERDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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