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Report for CCDS20656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20656.1 Public Mus musculus 6 Smco3 23 108 98 CCDS HistoryNCBI Gene:654818Re-query CCDS DB by CCDS ID:20656.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068293.3 ENSMUSP00000066235.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068293.3Link to Ensembl Protein Viewer:ENSMUSP00000066235.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068293Re-query CCDS DB by Protein ID:ENSMUSP00000066235
Original member Current member EBI ENSMUST00000111894.1 ENSMUSP00000107525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111894.1Link to Ensembl Protein Viewer:ENSMUSP00000107525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111894Re-query CCDS DB by Protein ID:ENSMUSP00000107525
Original member Current member EBI ENSMUST00000203468.1 ENSMUSP00000144838.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203468.1Link to Ensembl Protein Viewer:ENSMUSP00000144838.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203468Re-query CCDS DB by Protein ID:ENSMUSP00000144838
Original member Current member NCBI NM_001039558.2 NP_001034647.2 Accepted alive Link to Nucleotide Sequence:NM_001039558.2Link to Protein Sequence:NP_001034647.2Re-query CCDS DB by Nucleotide ID:NM_001039558Re-query CCDS DB by Protein ID:NP_001034647Link to BLAST:NP_001034647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034647.2 225 Q8BQM7 225 100% 0 0

Chromosomal Locations for CCDS 20656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136831197 136831874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCTCAGAGTGACTTCCTCTACCCACAAAACCCAAGGAGGCGACAGGAAGTAAACCGCCTTCACCAGC
AGCTGCTGGACTGCTTGTCTGACAGCTTCCAGGTCACCAACAAGCTCACAGGGGTTCTTAATACCCACTT
GGGTTGCAGGCTGGCCTTCATTGAAATGAAAAGCGATGGAACCATCAAAGAAAACTGTGACATCATTATC
CAAGCCATGACAAAAATCCAAAAGGAACTGCAAAAGATTGACGAGGCACTGAAAGACCAACTAGAGCCAA
CCCTTTATAGGAAGCTGCAGGATATTAAGGAAAGGGAGACGGAGAAGATTGCCATCGTGCAGAAGGTCAT
TTCTGTCATCCTGGGAGAAGCTACATCTGCAGCCAGTGCAGTGGCTGTTAAACTGGTGGGCTCAAGTGTC
ACAACTGGCATAATTAGCAAGCTGGTCTCTGTGCTAGCTCACATCGGGACTTCTCTCCTTGGAAGCATTG
GCGTTGCCGTGCTCAGCCTCGGGATAGATATGATCATTCAAGCCATCTTGGGAGCAGTGGAGAGGACACA
GCTTCAGGCAGCCATCAAAAGTTATGAGAAGCACCTGGAGGAGTTCAAGGCTGCCTCAGCAAAGTACCAT
CATGCTATCACTGAGGTTGCCACTGCTGTGAAGCGCCAGCTAAGATGA

Translation (225 aa):
MAQSDFLYPQNPRRRQEVNRLHQQLLDCLSDSFQVTNKLTGVLNTHLGCRLAFIEMKSDGTIKENCDIII
QAMTKIQKELQKIDEALKDQLEPTLYRKLQDIKERETEKIAIVQKVISVILGEATSAASAVAVKLVGSSV
TTGIISKLVSVLAHIGTSLLGSIGVAVLSLGIDMIIQAILGAVERTQLQAAIKSYEKHLEEFKAASAKYH
HAITEVATAVKRQLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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