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Report for CCDS36134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36134.1 Public Mus musculus 11 Med7 23 108 98 CCDS HistoryNCBI Gene:66213Re-query CCDS DB by CCDS ID:36134.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020665.12 ENSMUSP00000020665.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020665.12Link to Ensembl Protein Viewer:ENSMUSP00000020665.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020665Re-query CCDS DB by Protein ID:ENSMUSP00000020665
Original member Current member EBI ENSMUST00000109232.3 ENSMUSP00000104855.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109232.3Link to Ensembl Protein Viewer:ENSMUSP00000104855.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109232Re-query CCDS DB by Protein ID:ENSMUSP00000104855
Original member Current member EBI ENSMUST00000170928.7 ENSMUSP00000131852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170928.7Link to Ensembl Protein Viewer:ENSMUSP00000131852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170928Re-query CCDS DB by Protein ID:ENSMUSP00000131852
Original member Current member NCBI NM_001104530.1 NP_001098000.1 Accepted alive Link to Nucleotide Sequence:NM_001104530.1Link to Protein Sequence:NP_001098000.1Re-query CCDS DB by Nucleotide ID:NM_001104530Re-query CCDS DB by Protein ID:NP_001098000Link to BLAST:NP_001098000.1
Original member Current member NCBI NM_001104556.1 NP_001098026.1 Accepted alive Link to Nucleotide Sequence:NM_001104556.1Link to Protein Sequence:NP_001098026.1Re-query CCDS DB by Nucleotide ID:NM_001104556Re-query CCDS DB by Protein ID:NP_001098026Link to BLAST:NP_001098026.1
Original member Current member NCBI NM_001104557.1 NP_001098027.1 Accepted alive Link to Nucleotide Sequence:NM_001104557.1Link to Protein Sequence:NP_001098027.1Re-query CCDS DB by Nucleotide ID:NM_001104557Re-query CCDS DB by Protein ID:NP_001098027Link to BLAST:NP_001098027.1
Original member Current member NCBI NM_025426.3 NP_079702.3 Accepted alive Link to Nucleotide Sequence:NM_025426.3Link to Protein Sequence:NP_079702.3Re-query CCDS DB by Nucleotide ID:NM_025426Re-query CCDS DB by Protein ID:NP_079702Link to BLAST:NP_079702.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098000.1 233 Q9CZB6 233 100% 0 0
NP_001098026.1 233 Q9CZB6 233 100% 0 0
NP_001098027.1 233 Q9CZB6 233 100% 0 0
NP_079702.3 233 Q9CZB6 233 100% 0 0

Chromosomal Locations for CCDS 36134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46440580 46441281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGGTGAACCACAGCAAGTGAGTGCACTTCCACCGCCTCCAATGCAGTACATCAAGGAATATACAGATG
AAAATATTCAGGAAGGCTTGGCTCCCAAGCCTCCTCCTCCAATTAAAGACAGCTACATGATGTTTGGCAA
CCAGTTCCAATGTGATGATCTTATCATTCGCCCTTTAGAAAGTCAGGGCATTGAACGGCTTCATCCTATG
CAATTTGATCATAAGAAAGAGCTGAGAAAACTCAATATGTCTATACTGATTAATTTCTTAGACCTTTTAG
ACATCTTAATAAGAAGTCCTGGGAGTATAAAACGAGAAGAAAAGCTAGAAGATCTTAAGCTACTTTTTGT
ACATGTACATCATCTTATAAATGAATATCGACCCCACCAAGCAAGAGAGACTTTGAGAGTCATGATGGAG
GTCCAGAAACGCCAGCGCCTTGAAACAGCTGAGAGGTTTCAGAAACATCTGGAACGAGTCATTGAAATGA
TTCAGAATTGCTTGGCTTCTTTGCCCGATGATTTGCCCCATTCAGAAGCAGGGATGAGAGTTAAAGCTGA
GCCGATGGATACTGATGATAACAGCAATTGTCCTGGACAGAATGAACAACAAAGAGAAAGTTCAGGTCAC
AGAAGGGACCAGATTATAGAAAAAGATGCTGCCTTATGTGTGCTAATTGATGAAATGAATGAAAGGCCAT
GA

Translation (233 aa):
MGEPQQVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM
QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMME
VQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEAGMRVKAEPMDTDDNSNCPGQNEQQRESSGH
RRDQIIEKDAALCVLIDEMNERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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