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Report for CCDS20360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20360.1 Public Mus musculus 6 Klf15 23 108 98 CCDS HistoryNCBI Gene:66277Re-query CCDS DB by CCDS ID:20360.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032174.11 ENSMUSP00000032174.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032174.11Link to Ensembl Protein Viewer:ENSMUSP00000032174.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032174Re-query CCDS DB by Protein ID:ENSMUSP00000032174
Original member Current member EBI ENSMUST00000113530.3 ENSMUSP00000109158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113530.3Link to Ensembl Protein Viewer:ENSMUSP00000109158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113530Re-query CCDS DB by Protein ID:ENSMUSP00000109158
Original member Current member EBI ENSMUST00000203607.1 ENSMUSP00000144808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203607.1Link to Ensembl Protein Viewer:ENSMUSP00000144808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203607Re-query CCDS DB by Protein ID:ENSMUSP00000144808
Original member Current member EBI ENSMUST00000203039.2 ENSMUSP00000144962.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203039.2Link to Ensembl Protein Viewer:ENSMUSP00000144962.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203039Re-query CCDS DB by Protein ID:ENSMUSP00000144962
Original member Current member NCBI NM_023184.4 NP_075673.1 Accepted alive Link to Nucleotide Sequence:NM_023184.4Link to Protein Sequence:NP_075673.1Re-query CCDS DB by Nucleotide ID:NM_023184Re-query CCDS DB by Protein ID:NP_075673Link to BLAST:NP_075673.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075673.1 415 Q9EPW2 415 100% 0 0

Chromosomal Locations for CCDS 20360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90466445 90467523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90474120 90474288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGTGGACCACCTGCTTCCAGTGGACGAGACCTTCTCGTCACCGAAATGCTCAGTGGGTTACCTAGGGG
ACAGGCTGGCCAGCCGGCAGCCATACCACATGTTGCCCTCGCCCATCTCGGAGGATGACAGCGATGTCTC
CAGCCCCTGCTCTTGTGCCAGCCCTGACTCGCAAGCCTTCTGTTCCTGCTACAGTGCGGGTCCAGGCCCT
GAGGCCCAGGGCAGCATCTTGGATTTCCTCCTGTCCCGGGCCACACTGGGCAGTGGTGGTGGCAGTGGAG
GTATTGGAGATAGCAGTGGCCCTGTGACCTGGGGATCATGGAGGAGAGCCTCTGTGCCTGTGAAGGAGGA
ACATTTCTGCTTCCCTGAATTTCTGTCAGGGGACACTGATGACGTCTCCAGGCCCTTCCAGCCTACCCTG
GAGGAGATTGAAGAATTCCTGGAAGAGAACATGGAGGCTGAGGTCAAGGAGGCCCCAGAGAACGGTAGCA
GGGACCTGGAGACCTGTAGCCAGCTCTCAGCTGGGTCACACCGGAGCCACCTTCATCCAGAGTCTGCTGG
GAGAGAGCGCTGTACCCCACCACCAGGTGGCACGAGTGGGGGTGGTGCCCAAAGTGCAGGTGAGGGGCCA
GCACATGATGGCCCCGTGCCGGTGCTACTGCAGATCCAGCCTGTTGCTGTGAAGCAGGAGGCAGGTACAG
GGCCAGCCTCCCCAGGGCAGGCCCCAGAGAGCGTCAAGGTCGCCCAGCTTCTAGTCAACATCCAGGGGCA
GACCTTTGCACTCCTGCCTCAAGTGGTACCATCCTCCAACTTGAACCTGCCCTCAAAGTTTGTGCGAATT
GCGCCTGTGCCCATTGCCGCCAAACCTATTGGCTCAGGATCCCTAGGGCCCGGCCCTGCTGGCCTCCTTG
TGGGCCAGAAGTTTCCCAAGAACCCAGCAGCAGAACTTCTCAAAATGCACAAATGCACTTTCCCAGGCTG
CAGCAAGATGTACACCAAGAGCAGCCACCTCAAGGCCCACCTGCGTCGGCACACAGGCGAGAAGCCCTTT
GCCTGCACCTGGCCAGGCTGCGGCTGGAGGTTTTCCCGCTCAGATGAGTTGTCAAGGCACCGGCGATCTC
ACTCGGGTGTGAAGCCGTACCAGTGTCCCGTGTGCGAGAAGAAATTCGCGCGGAGTGACCACCTCTCCAA
ACACATCAAAGTGCATCGCTTCCCACGAAGCAGCCGCGCAGTACGCGCCATCAACTGA

Translation (415 aa):
MVDHLLPVDETFSSPKCSVGYLGDRLASRQPYHMLPSPISEDDSDVSSPCSCASPDSQAFCSCYSAGPGP
EAQGSILDFLLSRATLGSGGGSGGIGDSSGPVTWGSWRRASVPVKEEHFCFPEFLSGDTDDVSRPFQPTL
EEIEEFLEENMEAEVKEAPENGSRDLETCSQLSAGSHRSHLHPESAGRERCTPPPGGTSGGGAQSAGEGP
AHDGPVPVLLQIQPVAVKQEAGTGPASPGQAPESVKVAQLLVNIQGQTFALLPQVVPSSNLNLPSKFVRI
APVPIAAKPIGSGSLGPGPAGLLVGQKFPKNPAAELLKMHKCTFPGCSKMYTKSSHLKAHLRRHTGEKPF
ACTWPGCGWRFSRSDELSRHRRSHSGVKPYQCPVCEKKFARSDHLSKHIKVHRFPRSSRAVRAIN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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