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Report for CCDS20232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20232.1 Public Mus musculus 6 Chmp3 23 108 98 CCDS HistoryNCBI Gene:66700Re-query CCDS DB by CCDS ID:20232.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065364.4 ENSMUSP00000068410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065364.4Link to Ensembl Protein Viewer:ENSMUSP00000068410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000065364Re-query CCDS DB by Protein ID:ENSMUSP00000068410
Original member Current member EBI ENSMUST00000059462.11 ENSMUSP00000109815.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059462.11Link to Ensembl Protein Viewer:ENSMUSP00000109815.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059462Re-query CCDS DB by Protein ID:ENSMUSP00000109815
Original member Current member NCBI NM_001361405.1 NP_001348334.1 Accepted alive Link to Nucleotide Sequence:NM_001361405.1Link to Protein Sequence:NP_001348334.1Re-query CCDS DB by Nucleotide ID:NM_001361405Re-query CCDS DB by Protein ID:NP_001348334Link to BLAST:NP_001348334.1
Original member Current member NCBI NM_025783.4 NP_080059.2 Accepted alive Link to Nucleotide Sequence:NM_025783.4Link to Protein Sequence:NP_080059.2Re-query CCDS DB by Nucleotide ID:NM_025783Re-query CCDS DB by Protein ID:NP_080059Link to BLAST:NP_080059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348334.1 224 Q9CQ10 224 100% 0 0
NP_080059.2 224 Q9CQ10 224 100% 0 0

Chromosomal Locations for CCDS 20232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71543989 71544033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71552399 71552459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71560897 71561076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71574115 71574236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71577731 71577845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71579641 71579792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGGACTCTTTGGAAAAACCCAGGAGAAGCCTCCCAAAGAGCTGGTTAATGAATGGTCACTGAAGATCA
GAAAGGAAATGAGAGTTGTTGACAGGCAAATAAGAGATATCCAAAGAGAAGAAGAGAAAGTAAAACGGTC
TGTGAAAGATGCAGCCAAGAAGGGCCAAAAGGAAGTCTGTGTGGTTCTGGCCAAGGAGATGATCAGGTCA
AGGAAAGCCGTGAGCAAGCTCTATGCCTCCAAAGCACACATGAACTCTGTGCTCATGGGCATGAAGAACC
AACTCGCGGTCCTGCGAGTAGCTGGTTCTCTGCAGAAGAGCACAGAAGTGATGAAGGCAATGCAGAGTCT
TGTGAAGATCCCAGAAATCCAGGCCACCATGCGGGAGCTGTCCAAAGAGATGATGAAGGCTGGAATCATA
GAGGAGATGTTAGAGGATACATTTGAAAGCATGGATGATCAAGAAGAAATGGAAGAAGCAGCTGAGATGG
AGATTGACAGAATCCTCTTTGAAATCACAGCAGGAGCCTTGGGCAAAGCACCCAGTAAAGTAACCGATGC
CCTTCCTGAGCCTGAACCCGCAGGAGCGATGGCTGCCTCCGAAGAGGGAGAAGAGGAAGAAGATGAAGAG
GACCTGGAGGCTATGCAGTCACGGCTGGCCACACTCAGAAGCTAG

Translation (224 aa):
MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRS
RKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGII
EEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEEGEEEEDEE
DLEAMQSRLATLRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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