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Report for CCDS38159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38159.1 Public Mus musculus 2 Dnajc10 23 108 98 CCDS HistoryNCBI Gene:66861Re-query CCDS DB by CCDS ID:38159.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028392.7 ENSMUSP00000028392.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028392.7Link to Ensembl Protein Viewer:ENSMUSP00000028392.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028392Re-query CCDS DB by Protein ID:ENSMUSP00000028392
Original member Current member NCBI NM_024181.2 NP_077143.2 Accepted alive Link to Nucleotide Sequence:NM_024181.2Link to Protein Sequence:NP_077143.2Re-query CCDS DB by Nucleotide ID:NM_024181Re-query CCDS DB by Protein ID:NP_077143Link to BLAST:NP_077143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077143.2 793 Q9DC23 793 100% 0 0

Chromosomal Locations for CCDS 38159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 80317396 80317599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80319160 80319322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80321244 80321294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80324660 80324742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80324995 80325126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80325618 80325711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80326658 80326735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80328072 80328115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80331269 80331406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80332929 80333018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80333726 80333839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80335453 80335567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80340473 80340600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80340812 80340928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80343917 80344018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80344924 80345079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80346512 80346645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80347344 80347397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80347648 80347795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80349269 80349388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80350629 80350733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80352859 80352870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGGAGTCTGGTTAAACAAAGATGACTTTATCAGAGACTTGAAGAGGATCAGTCTCTGTCTTCTGATAC
TGTACGTGGTCGTTGTGGTGGGCACAGATCAGAATTTTTACAGTTTACTTGGAGTGTCGAAAACTGCAAG
CAGTAGAGAAATAAGACAAGCCTTTAAGAAATTAGCACTGAAGTTACATCCTGATAAAAACCCGAATAAC
CCAAATGCACATGGTGATTTTTTAAAAATAAATAGAGCATATGAAGTACTCAAAGATGAAGATCTACGGA
AAAAGTATGACAAATATGGAGAAAAGGGACTTGAAGATAATCAAGGAGGCCAGTATGAGAGCTGGAGCTA
CTACCGTTACGATTTCGGTATTTACGATGATGATCCTGAAATCATAACATTAGAAAGAAGAGAATTTGAT
GCTGCTGTCAACTCTGGAGAACTGTGGTTTGTAAACTTTTACTCCCCAGGATGTTCGCATTGCCATGATT
TAGCCCCCACTTGGAGAGAATTTGCTAAAGAAGTGGATGGGTTGCTTCGAATCGGAGCTGTCAACTGTGG
TGATGATCGGATGCTCTGCCGAATGAAAGGAGTTAACAGCTACCCCAGCCTCTTCATCTTTAGGTCTGGA
ATGGCTGCAGTGAAGTACAATGGAGATCGGTCAAAGGAGAGCTTAGTGGCCTTCGCCATGCAGCACGTCA
GGAGCACAGTGACAGAGCTGTCAACAGGAAATTTTGTTAATGCCATAGAAACTGCTTTTGCTGCTGGTGT
TGGCTGGCTGATCACATTCTGCTCTAAAGGAGAAGATTGTTTGACATCACAGACCCGACTCAGGCTTAGT
GGCATGTTGGACGGCCTTGTTAACGTGGGATGGGTGGACTGTGACGCCCAGGACAGCCTCTGCAAGAGCC
TGGATACCACAGCCAGCACCACGGCTTATTTCCCTCCTGGAGCCACTTTGAATGACAGGGAAAAATCCAG
TGTGTTGTTTCTTAATTCATTGGATGCTAAGGAAATATACATGGAAATCATACATAATCTTCCAGACTTT
GAACTGCTTTCAGCAAATCAACTAGAGGATCGTTTGGCACATCATCGCTGGCTTGTATTTTTTCATTTTG
GAAAAAATGAAAACGCAAATGATCCTGAGTTGAAAAAACTGAAAACTCTACTTAAAAATGAGCATATTCA
AGTTGGAAGGTTTGATTGCTCTTCTGCACCGGGCATCTGCTCTGATCTTTATGTCTTCCAGCCCTGCCTA
GCAGTGTTTAAAGGACAAGGAACCAAAGAATATGAAATTCATCATGGAAAGAAGATTCTATACGATATAC
TTGCTTTTGCCAAAGAAAGTGTTAATTCTCATGTTACCACACTTGGACCTCAGAACTTCCCTGCAAGTGA
CAAGGAACCATGGCTTGTTGACTTCTTTGCCCCTTGGTGTCCGCCATGTCGTGCGCTTTTGCCAGAGTTA
CGGAAAGCATCAACACTGCTCTACGGTCAACTCAAAGTTGGTACCTTAGACTGTACAATTCATGAAGGAC
TCTGCAACATGTATAACATCCAAGCTTATCCAACGACAGTGGTATTCAATCAGTCCAGTATTCATGAGTA
TGAAGGACATCACTCTGCGGAACAGATCTTGGAGTTCATAGAGGATCTCAGAAACCCTTCAGTGGTCTCT
CTTACACCCAGCACTTTCAATGAGCTGGTTAAACAGAGAAAGCATGATGAAGTCTGGATGGTCGATTTCT
ATTCTCCATGGTGTCATCCCTGTCAGGTCTTGATGCCAGAATGGAAACGCATGGCCCGGACGTTAACTGG
ACTGATCAATGTAGGCAGTGTGGACTGCCAACAGTATCATTCTTTTTGTACTCAAGAAAATGTTCAAAGA
TACCCCGAGATAAGATTTTATCCCCAAAAGTCAAGTAAAGCCTATCAGTATCATAGTTACAATGGCTGGA
ATAGGGATGCGTATTCCCTGAGAAGCTGGGGTCTTGGATTTTTGCCCCAAGCATCCATAGATTTAACACC
TCAGACTTTCAATGAAAAAGTTCTACAAGGGAAAACTCACTGGGTGGTTGATTTCTATGCTCCTTGGTGT
GGACCTTGCCAGAATTTTGCTCCTGAGTTTGAACTCTTGGCTAGGATGATCAAAGGAAAAGTGAGAGCCG
GGAAAGTGGACTGTCAGGCTTACCCCCAGACGTGCCAGAAAGCCGGCATCAAAGCCTACCCCAGTGTCAA
ACTGTACCAGTACGAGAGAGCAAAGAAAAGTATTTGGGAAGAGCAAATAAATTCCAGAGATGCAAAAACT
ATTGCTGCCTTAATTTATGGAAAATTGGAAACGCTCCAAAGCCAAGTAAAAAGAAATAAGGATGAGCTTT
GA

Translation (793 aa):
MGVWLNKDDFIRDLKRISLCLLILYVVVVVGTDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN
PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFD
AAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG
MAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS
GMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDF
ELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVGRFDCSSAPGICSDLYVFQPCL
AVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWCPPCRALLPEL
RKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVS
LTPSTFNELVKQRKHDEVWMVDFYSPWCHPCQVLMPEWKRMARTLTGLINVGSVDCQQYHSFCTQENVQR
YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWC
GPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKT
IAALIYGKLETLQSQVKRNKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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