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Report for CCDS52694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52694.1 Public Mus musculus 8 Ctu2 23 108 98 CCDS HistoryNCBI Gene:66965Re-query CCDS DB by CCDS ID:52694.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52694.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116412.7 ENSMUSP00000112113.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116412.7Link to Ensembl Protein Viewer:ENSMUSP00000112113.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116412Re-query CCDS DB by Protein ID:ENSMUSP00000112113
Original member Current member NCBI NM_153775.2 NP_722470.2 Accepted alive Link to Nucleotide Sequence:NM_153775.2Link to Protein Sequence:NP_722470.2Re-query CCDS DB by Nucleotide ID:NM_153775Re-query CCDS DB by Protein ID:NP_722470Link to BLAST:NP_722470.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722470.2 514 Q3U308 514 100% 0 0

Chromosomal Locations for CCDS 52694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122476228 122476295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122476515 122476589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122476906 122476984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122477177 122477236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122478185 122478245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122478677 122478786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122478893 122479194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122479277 122479412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122479590 122479721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122480143 122480234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122480902 122481005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122481086 122481224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122481331 122481397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122481471 122481529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122481596 122481656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGTGTCAGGCCGGTGAGGATTACGCGGGGCCGGCGCGGCGGGAGCCTCCGCCCGTGCCGCGGCCAAGCC
GGGAGCAGAAATGTGTGAAGTGCGCAGAAGGCCTGCCGGTGGTGGTGATACGAGCGGGAGATGCCTTCTG
CAGGGTTTGTTTCAAGGCATTCTACGTTCACAAATTCAGAGCCATGCTTGGGAAGAACCGGGTCATCTTT
CCTGGGGAGAAGGTGCTCCTGTCCTGGTCTGGGGGCCCTTCGTCCAGCTCCATGGTCTGGCAAGTGCTTG
AGGGCCTGAGTCAGGATTCTGCGAAACGGCTGCGCTTTGTGCCAGGAGTCATCTATGTTGATGAGGGCGC
AGCCTGTGGTCAGAGCTTGGAGGACAGACAGAAGACGGTGGCTGAGGTGAAGCGGATCCTGGAGAACACT
GGTTTCCCATGGCATGTGGTTGCCTTAGAAGAGGTGTTCAGCTTGCCCCCATCAGTGCTATGCTGCACTT
CCCAGGAGTCAGCAGGGACAGAGGAGGCCTACAAGGCTGCCGTGGACCGCTTCCTGCAGCAGCAGCAGCA
GCAGCAGCAGCGTGTGCTGGGAGCTGAGGCCGGTGCCAGCCCAGCTCAGGGAGAGGCTCGGCTGCATCCA
TCCCACGGCCGGGAACCCTCAGGCACGGCCGGGTACCCCACAGCTGCTCAGACAGAGGCCTTGTCTAGGT
TGTTCAGCTCCATAAAGACACTGACAGCCAAAGAGGAGCTTCTGCAGACCCTGAGGACCCATCTGATTGT
GCACATAGCCCGAGTCCATGGCTATTGCAAGGTAATGACAGGGGAGACCTGCACCCGCCTGGCCATCAAG
CTTATGACCAACCTGGCCCTGGGGAGAGGCGCCTTCCTCGCCTGGGACACGGGCTTCTCAGATGAGCGAC
ACGGGGATGTGGTGTTGGTGAGGCCCATGCGGGACCACACGCTGAAGGAAGTGGCCTTCTACAACCACCT
GTTTAGAGTCCCCTCAGTCTTCACACCAGCCATCGATACCAAGGCTCCAGAAAAGGCTAGCATCCACCGG
CTGATGGAGGCCTTTATCCTGAGGCTACAGACTCTGTTCCCGTCTACAGTCAGCACCGTGTACAGGACGA
GTGAGAAGCTGGTCAAAGCTCCCCGGGAGGGTTGTGCCGCTGGCCCGTCAGGCCCCAGCTGCCTCCTGTG
CATGTGTGCCCTGGACATTGACACTGCTGACAGTGCCACGGCCTTTGGGGCTCAGTCCTCCTCACATCTC
TCCCAGATGCCGAGTGCTGAGGCTGGGATGCCTACCCAGCCCTGCTGTGCTGCAGGGGAGGGTCAGGCCC
AGAGCTGCCATAGGGAAGTTGGCAAGAGGGGGGATGCACGGGCCTGCATCACAGAGCAGTTATGTTATAG
CTGCCGAGTGAACATGAAGGACCTGCCCTCCTTGGACCCATTGCCACCCTACGTCCTTGCTGAGGCTCAG
CTCCGCAGCCAGAGGGGCTCGGTCTCTGAGGAAATCCAGGAGTATCTGATTACAGATGAGGAGGAAGACA
GCTGA

Translation (514 aa):
MCQAGEDYAGPARREPPPVPRPSREQKCVKCAEGLPVVVIRAGDAFCRVCFKAFYVHKFRAMLGKNRVIF
PGEKVLLSWSGGPSSSSMVWQVLEGLSQDSAKRLRFVPGVIYVDEGAACGQSLEDRQKTVAEVKRILENT
GFPWHVVALEEVFSLPPSVLCCTSQESAGTEEAYKAAVDRFLQQQQQQQQRVLGAEAGASPAQGEARLHP
SHGREPSGTAGYPTAAQTEALSRLFSSIKTLTAKEELLQTLRTHLIVHIARVHGYCKVMTGETCTRLAIK
LMTNLALGRGAFLAWDTGFSDERHGDVVLVRPMRDHTLKEVAFYNHLFRVPSVFTPAIDTKAPEKASIHR
LMEAFILRLQTLFPSTVSTVYRTSEKLVKAPREGCAAGPSGPSCLLCMCALDIDTADSATAFGAQSSSHL
SQMPSAEAGMPTQPCCAAGEGQAQSCHREVGKRGDARACITEQLCYSCRVNMKDLPSLDPLPPYVLAEAQ
LRSQRGSVSEEIQEYLITDEEEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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