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Report for CCDS20707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20707.1 Public Mus musculus 6 Ccdc91 23 108 98 CCDS HistoryNCBI Gene:67015Re-query CCDS DB by CCDS ID:20707.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032441.13 ENSMUSP00000032441.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032441.13Link to Ensembl Protein Viewer:ENSMUSP00000032441.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032441Re-query CCDS DB by Protein ID:ENSMUSP00000032441
Original member Current member NCBI NM_001355713.1 NP_001342642.1 Accepted alive Link to Nucleotide Sequence:NM_001355713.1Link to Protein Sequence:NP_001342642.1Re-query CCDS DB by Nucleotide ID:NM_001355713Re-query CCDS DB by Protein ID:NP_001342642Link to BLAST:NP_001342642.1
Original member Current member NCBI NM_025911.2 NP_080187.2 Accepted alive Link to Nucleotide Sequence:NM_025911.2Link to Protein Sequence:NP_080187.2Re-query CCDS DB by Nucleotide ID:NM_025911Re-query CCDS DB by Protein ID:NP_080187Link to BLAST:NP_080187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342642.1 442 Q9D8L5-1 442 100% 0 0
NP_080187.2 442 Q9D8L5-1 442 100% 0 0

Chromosomal Locations for CCDS 20707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147507798 147507827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147510824 147510902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147534029 147534189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147535588 147535791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147537376 147537480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147562635 147562712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147575473 147575580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147590387 147590479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147590569 147590637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147592039 147592215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147606882 147606995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147631575 147631685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGATGATGACGACTTTGGTGGCTTTGAGGCTGCAGAGACCTTTGATGGTGAGCAAGGAGGAAACCAAG
CTGTGTCTCCTGCTGTCCCCTGGGCCACCTTTCCTGCAGTATCCGGAGTGCGACTCTCACCAGCTTCTCC
GGAGCTTATCCTGGACCATGACCACTCATCTCCATCCACTGGCCACCTCCCTCCAGATGCTGTCATTTCC
TCAGCAGATGATACGCATGCAGATAGCAGCCTCATGAGTCAGACCATCTCCAAGGCTCAGATTCAGCAGT
CAGCGCACACACATCTGAACATCCCTCTCTTCCCACTTGGTTTAACGGATGAGCCGAGCCATGGAGCACT
TGCCCTGGAGGATGAGCCTGAAGGTCCTGGAGTCCACGTGTCCAACTCTCAGCTCCGGCAAAAAATATCA
AGTCTGGAGACTAAACTCAAAGCTTCTGAAGAAGAAAAGCAGAGAATTAAAAAGGATGTGGAGTCACTGA
TGGAGAAACACAGTGTCCTGGAGAAAGGCTTCTTGAAGGAAAAGGAGCAGGATGCTGTATCCTTTCAAGC
CAGATACCGTGAGCTTCAGGAAAAACATAAACAAGAATTGGAAGACATGAGGAAGGCTGGGCACGAGGCG
CTGAGCATTATAGTGGATGAGTACAAGGCACTTCTGCAGTCTTCAGTTAAGCAGCAGCTAGATGCCATCG
AGAAGCAATATGTGTCTGCAATCGAGAAGCAAGCTCACCGGTGTGAGGAGCTCCTGCATGCTCAGCATCA
GAGGCTTCTAGACGTGCTGGACACTGAGAAGGAACTGCTAAGAGAGAAAATCCAGGAAGCTTTGACTCAG
CAGTCACAGGAGCAGAAGGAATCACTGGAAAAGTGCCTCCAGGAGGAAATGCAGAGGAACAAAGAGACAC
TGGAGTCTGCTGTGAAGCTTGAGAAAGAAGCAATGAAAGATGTCATCACTAAAGCAGTGGGAGAAGAAAG
GGAAAATCTGGAGAAAGTTCATGCCGAAGAAAGGGAACTGTGGAAGACAGAACATGCAAGAGATCAGGAG
AGGGTGGCAGAGGCCATCCAGGCCGCTGTGCAGGAGCAGCAGAGGATGAGTCAGGAAGCTGTCAAGGCCG
CAATCGTAGAGGAGCAGAGGAGAAGTGAAAAGGCCATGGAGGAAGCCGTAAAGAGAACGAGGGACGAGCT
GGTGGAATACGTGAGGGAGCAGAGAAGGCTCGATCAAGTCACCCGCCAGCGTAGCCTGTCCAGCCTGGAG
CTGTTCCTCTCCTGCGCCCAGAAGCAGCTGAGTGCTCTAATAGCTACAGAGCCTGTTGACATTGAGTAG

Translation (442 aa):
MDDDDFGGFEAAETFDGEQGGNQAVSPAVPWATFPAVSGVRLSPASPELILDHDHSSPSTGHLPPDAVIS
SADDTHADSSLMSQTISKAQIQQSAHTHLNIPLFPLGLTDEPSHGALALEDEPEGPGVHVSNSQLRQKIS
SLETKLKASEEEKQRIKKDVESLMEKHSVLEKGFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEA
LSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLDVLDTEKELLREKIQEALTQ
QSQEQKESLEKCLQEEMQRNKETLESAVKLEKEAMKDVITKAVGEERENLEKVHAEERELWKTEHARDQE
RVAEAIQAAVQEQQRMSQEAVKAAIVEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRSLSSLE
LFLSCAQKQLSALIATEPVDIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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