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Report for CCDS17915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17915.1 Public Mus musculus 3 Dnajb4 23 108 98 CCDS HistoryNCBI Gene:67035Re-query CCDS DB by CCDS ID:17915.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029669.3 ENSMUSP00000029669.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029669.3Link to Ensembl Protein Viewer:ENSMUSP00000029669.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029669Re-query CCDS DB by Protein ID:ENSMUSP00000029669
Original member Current member EBI ENSMUST00000050073.12 ENSMUSP00000053916.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050073.12Link to Ensembl Protein Viewer:ENSMUSP00000053916.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050073Re-query CCDS DB by Protein ID:ENSMUSP00000053916
Original member Current member EBI ENSMUST00000144950.7 ENSMUSP00000114356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144950.7Link to Ensembl Protein Viewer:ENSMUSP00000114356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144950Re-query CCDS DB by Protein ID:ENSMUSP00000114356
Original member NCBI NM_001356363.1 NP_001343292.1 Updated not alive Link to Nucleotide Sequence:NM_001356363.1Link to Protein Sequence:NP_001343292.1Re-query CCDS DB by Nucleotide ID:NM_001356363Re-query CCDS DB by Protein ID:NP_001343292
Current member NCBI NM_001356363.2 NP_001343292.1 Accepted alive Link to Nucleotide Sequence:NM_001356363.2Link to Protein Sequence:NP_001343292.1Re-query CCDS DB by Nucleotide ID:NM_001356363Re-query CCDS DB by Protein ID:NP_001343292Link to BLAST:NP_001343292.1
Original member NCBI NM_025926.5 NP_080202.1 Updated not alive Link to Nucleotide Sequence:NM_025926.5Link to Protein Sequence:NP_080202.1Re-query CCDS DB by Nucleotide ID:NM_025926Re-query CCDS DB by Protein ID:NP_080202
Current member NCBI NM_025926.6 NP_080202.1 Accepted alive Link to Nucleotide Sequence:NM_025926.6Link to Protein Sequence:NP_080202.1Re-query CCDS DB by Nucleotide ID:NM_025926Re-query CCDS DB by Protein ID:NP_080202Link to BLAST:NP_080202.1
Original member NCBI NM_027287.5 NP_081563.2 Updated not alive Link to Nucleotide Sequence:NM_027287.5Link to Protein Sequence:NP_081563.2Re-query CCDS DB by Nucleotide ID:NM_027287Re-query CCDS DB by Protein ID:NP_081563
Current member NCBI NM_027287.6 NP_081563.2 Accepted alive Link to Nucleotide Sequence:NM_027287.6Link to Protein Sequence:NP_081563.2Re-query CCDS DB by Nucleotide ID:NM_027287Re-query CCDS DB by Protein ID:NP_081563Link to BLAST:NP_081563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343292.1 337 Q9D832 337 100% 0 0
NP_080202.1 337 Q9D832 337 100% 0 0
NP_081563.2 337 Q9D832 337 100% 0 0

Chromosomal Locations for CCDS 17915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152185147 152185380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152186415 152186983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152193377 152193587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGGGAAAGACTATTATCACATTTTGGGAATTGACAAAGGAGCTACAGATGAAGATGTTAAAAAGGCTT
ACCGAAAGCAAGCCCTCAAATTTCACCCGGACAAGAACAAATCTCCTCAAGCAGAGGAAAAATTTAAAGA
GGTCGCAGAAGCGTATGAAGTACTGAGTGATCCTAAAAAGAGAGAAATATATGATCAGTTTGGCGAAGAA
GGCTTGAAGGGAGGCGCTGGAGGTACTGATGGACAAGGAGGTACCTTCAGGTACACTTTCCACGGAGATC
CTCATGCCACATTTGCAGCCTTTTTCGGAGGTTCCAACCCTTTTGAAATCTTCTTTGGGAGACGGATGGG
TGGAGGTCGAGATTCTGAAGAAATGGAAATAGATGGAGATCCCTTTAGTGCCTTTGGATTCAGCATGAAT
GGATATCCAAGAGACAGGAATTCTGTGGGACCCTCCCGTCTCAAACAAGACCCTCCCATTATTCATGAAC
TTAAAGTATCGCTTGAAGAAATATATAGTGGCTGCACCAAACGGATGAAGATTTCTCGAAAAAGATTAAA
TCCTGACGGAAGGAGTTACAGATCTGAGGACAAAATTCTCACCATTGAGATCAAAAAAGGGTGGAAAGAA
GGCACCAAAATCACTTTTCCGAGGGAAGGCGATGAAACACCAAATAGTATCCCAGCAGACATTGTTTTTG
TTATTAAAGACAAAGAACATCCCAAGTTTAAAAGAGACGGATCAAATATAGTTTATACTGCTAAAATTAG
TTTACGGGAGGCATTGTGTGGCTGCTCACTTAATGTGCCAACAATGGACGGAAGAAACCTACCTATGTCA
GTCACTGATATTGTGAAACCTGGGATGAGGAGAAGAGTTATTGGATATGGGCTGCCATTTCCAAAAAACC
CTGACCAGCGTGGCGACCTACTGATAGAATTTGATGTGTCCTTCCCAGACGTCATATCTGCAGCATCCAA
AGAGATCCTGAGGAAGCATCTCCCTGCCTCCTAG

Translation (337 aa):
MGKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE
GLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMN
GYPRDRNSVGPSRLKQDPPIIHELKVSLEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKE
GTKITFPREGDETPNSIPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMS
VTDIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHLPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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