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Report for CCDS29207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29207.1 Public Mus musculus 18 Yipf5 23 108 98 CCDS HistoryNCBI Gene:67180Re-query CCDS DB by CCDS ID:29207.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025364.5 ENSMUSP00000025364.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025364.5Link to Ensembl Protein Viewer:ENSMUSP00000025364.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025364Re-query CCDS DB by Protein ID:ENSMUSP00000025364
Original member Current member NCBI NM_023311.3 NP_075800.1 Accepted alive Link to Nucleotide Sequence:NM_023311.3Link to Protein Sequence:NP_075800.1Re-query CCDS DB by Nucleotide ID:NM_023311Re-query CCDS DB by Protein ID:NP_075800Link to BLAST:NP_075800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075800.1 257 Q9EQQ2 257 100% 0 0

Chromosomal Locations for CCDS 29207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 40206238 40206400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 40207687 40207868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 40210748 40210893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 40212043 40212215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 40218746 40218855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGTCAGGCTTTGATAACTTAAACAGCGGTTTCTACCAGACGAGTTACAGCATCGACGAGCAATCTCAGC
AGTCCTATGACTATGGAGGAAGTGGAGGACCCTACAGCAAGCAGTATGCTGGCTGTGACTACTCGCAGCA
AGGCCGATTTGTCCCTCCAGACATGATGCAGCCACAGCAGACATACACTGGGCAGATTTACCAGCCAACT
CAGGCCTATCCTCCAACAACACCTCAGCCATTCTATGGAGACAGCTTTGAGGAGGAGCCCCCTCTGTTAG
AAGAGTTGGGTATCAATTTTGACCACATTTGGCAAAAAACACTAACGGTGCTACACCCCCTGAGGGCAGC
TGACGGCAGCATCATGAATGAGACGGACTTGGCAGGGCCAGTGGTGTTCTGCCTTGCCTTTGGGGCCACA
CTGTTACTGGCTGGCAAAATCCAGTTTGGCTACGTATACGGGATCAGTGCGATTGGATGTTTAGGAATGT
TTTGTTTGTTAAATTTAATGAGTATGACAGGTGTGTCATTTGGCTGTGTGGCAAGTGTCCTGGGCTATTG
TCTTCTTCCCATGATCCTGTTGTCCAGCTTTGCAGTGGTATTTTCTTTACAAGGAATGGTAGGAATTCTT
CTCACTGCCACAATTATTGGATGGTGTAGTTTTTCTGCTTCCAAAATTTTTATTTCTGCATTAGCTATGG
ATGGACAACAACTTTTAGTGGCATATCCCTGTGCTTTGTTGTATGGAGTCTTTGCCCTGATTTCTGTCTT
CTGA

Translation (257 aa):
MSGFDNLNSGFYQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQTYTGQIYQPT
QAYPPTTPQPFYGDSFEEEPPLLEELGINFDHIWQKTLTVLHPLRAADGSIMNETDLAGPVVFCLAFGAT
LLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVVFSLQGMVGIL
LTATIIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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