NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25966.1 Public Mus musculus 12 L3hypdh 23 108 98 CCDS HistoryNCBI Gene:67217Re-query CCDS DB by CCDS ID:25966.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019862.2 ENSMUSP00000019862.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019862.2Link to Ensembl Protein Viewer:ENSMUSP00000019862.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019862Re-query CCDS DB by Protein ID:ENSMUSP00000019862
Original member Current member NCBI NM_026038.2 NP_080314.1 Accepted alive Link to Nucleotide Sequence:NM_026038.2Link to Protein Sequence:NP_080314.1Re-query CCDS DB by Nucleotide ID:NM_026038Re-query CCDS DB by Protein ID:NP_080314Link to BLAST:NP_080314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080314.1 354 Q9CXA2 354 100% 0 0

Chromosomal Locations for CCDS 25966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72073911 72074036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72077144 72077281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72077364 72077486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72079487 72079656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72084649 72085156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGAGGCGGCGCTGGCAGTGACCCGGCTGCCCCCAAACGACCCGAGGACGCCAGCACTGTCGGTGGTGG
ACATGCACACAGGCGGCGAGCCTCTGCGCATCGTGCACGCCGGGTGTCCGGAGGTGGCAGGGCCCACGTT
GCTGGCCAAGCGTCGCTACATGCGTCAACACCTCGACTACATCCGGCGGCGGCTCGTGTTCGAGCCCCGC
GGCCACCGGGACATGTACGGGGCCATCCTGGTGCCCAGTGAGCTGCCAGACGCACACCTAGGCGTCCTGT
TCTTGCACAACGAAGGCTACAGCTCCATGTGCGGTCACGCGGTGCTAGCGCTGGGCCGCTTCGCGCTCGA
CTTTGGACTGGTGCCCGCTCCCCCAAAAGGCGCCCGGGAGGCTCAGGTCAACATCCACTGCCCGTGTGGT
CTGGTGACCGCCTTCGTAGAGTGTGAAGGTGGCCGCAGTTGCGGCCCTGTGCGCTTCCACAGCGTCCCAG
CCTTTGTCCTGGCCTCAGACCTCACAGTGGATGTTCCTGGCCATGGAAAGGTGCTGGTGGACATTGCATA
TGGTGGGGCATTTTATGCGTTTGTTAGTGCAGAAAAATTAGGACTTGATGTGTGTTCTGCGAAGACGAGG
GACCTTGTGGATGCGGCAAGTGCATTGACAGGAGCAGTGAAAGCACAGTTTAAAATCAACCATCCTGAGA
GTGAAGACCTTGGTTTTTTGTATGGATCCATCTTGACGGATGGAAAAGATGCTTATAGTGAGGAGGCCAC
CACCAACATCTGCGTGTTTGCCGATGAACAGGTTGACAGAAGCCCCACCGGCTCGGGAGTGACAGCCAGA
ATTGCTCTGCAGTATCATAAGGGGCTCCTGCAGCTGAACCAGACCAGAGCCTTCAAAAGCAGCGCAACTG
GCTCGGTGTTCACAGGCTGTGCCGTGAGGGAAGCAAAGTGTGGAGATTTCAAAGCTGTCATAGTGGAAGT
TGCAGGACAAGCCCATTACACAGGGACAGCAAACTTGACAGTGGAAGATGGTGACCCACTAAGGGATGGC
TTTCTTCTCAAGTGA

Translation (354 aa):
MEAALAVTRLPPNDPRTPALSVVDMHTGGEPLRIVHAGCPEVAGPTLLAKRRYMRQHLDYIRRRLVFEPR
GHRDMYGAILVPSELPDAHLGVLFLHNEGYSSMCGHAVLALGRFALDFGLVPAPPKGAREAQVNIHCPCG
LVTAFVECEGGRSCGPVRFHSVPAFVLASDLTVDVPGHGKVLVDIAYGGAFYAFVSAEKLGLDVCSAKTR
DLVDAASALTGAVKAQFKINHPESEDLGFLYGSILTDGKDAYSEEATTNICVFADEQVDRSPTGSGVTAR
IALQYHKGLLQLNQTRAFKSSATGSVFTGCAVREAKCGDFKAVIVEVAGQAHYTGTANLTVEDGDPLRDG
FLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH