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Report for CCDS19052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19052.1 Public Mus musculus 4 C1qtnf12 23 108 98 CCDS HistoryNCBI Gene:67389Re-query CCDS DB by CCDS ID:19052.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024338.4 ENSMUSP00000024338.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024338.4Link to Ensembl Protein Viewer:ENSMUSP00000024338.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024338Re-query CCDS DB by Protein ID:ENSMUSP00000024338
Original member Current member NCBI NM_026125.3 NP_080401.1 Accepted alive Link to Nucleotide Sequence:NM_026125.3Link to Protein Sequence:NP_080401.1Re-query CCDS DB by Nucleotide ID:NM_026125Re-query CCDS DB by Protein ID:NP_080401Link to BLAST:NP_080401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080401.1 308 Q8R2Z0 308 100% 0 0

Chromosomal Locations for CCDS 19052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155962579 155962737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155964543 155964659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155964768 155964888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155964980 155965131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155965594 155965702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155965866 155965956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155966082 155966160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155966404 155966502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGTGGGCCTGGGGCTGGGCCGCTGCAGCGCTCCTCTGGCTACAGACTGCAGGAGCCGGGGCCCGGCAGG
AGCTCAAGAAGTCTCGGCAGCTGTTTGCGCGTGTGGATTCCCCCAATATTACCACGTCCAACCGTGAGGG
ATTCCCAGGCTCCGTCAAGCCCCCGGAAGCCTCTGGACCTGAGCTCTCAGATGCCCACATGACGTGGTTG
AACTTTGTCCGACGGCCAGATGATGGGTCCTCTAGAAAACGGTGTCGTGGCCGGGACAAGAAGTCGCGAG
GCCTCTCAGGTCTCCCAGGGCCCCCAGGACCTCCTGGCCCTCCTGGTCCCCCTGGCTCCCCTGGTGTGGG
CGTTACCCCAGAGGCCTTACTGCAGGAATTTCAGGAGATACTGAAAGAGGCCACAGAACTTCGATTCTCA
GGGCTACCAGACACATTGTTACCCCAGGAACCCAGCCAACGGCTGGTGGTTGAGGCCTTCTACTGCCGTT
TGAAAGGCCCTGTGCTGGTGGACAAGAAGACTCTGGTGGAACTGCAAGGATTCCAAGCTCCTACTACTCA
GGGCGCCTTCCTGCGGGGATCTGGCCTGAGCCTGTCCTTGGGCCGATTCACAGCCCCAGTCTCTGCCATC
TTCCAGTTTTCTGCCAGCCTGCACGTGGACCACAGTGAACTGCAGGGCAGAGGCCGGTTGCGTACCCGGG
ATATGGTCCGTGTTCTCATCTGTATTGAGTCCTTGTGTCATCGTCATACGTCCCTGGAGGCTGTATCAGG
TCTGGAGAGCAACAGCAGGGTCTTCACAGTGCAGGTTCAGGGGCTGCTGCATCTACAGTCTGGACAGTAT
GTCTCTGTGTTCGTGGACAACAGTTCTGGGGCAGTCCTCACCATCCAGAACACTTCCAGCTTCTCGGGAA
TGCTTTTGGGTACCTAG

Translation (308 aa):
MWAWGWAAAALLWLQTAGAGARQELKKSRQLFARVDSPNITTSNREGFPGSVKPPEASGPELSDAHMTWL
NFVRRPDDGSSRKRCRGRDKKSRGLSGLPGPPGPPGPPGPPGSPGVGVTPEALLQEFQEILKEATELRFS
GLPDTLLPQEPSQRLVVEAFYCRLKGPVLVDKKTLVELQGFQAPTTQGAFLRGSGLSLSLGRFTAPVSAI
FQFSASLHVDHSELQGRGRLRTRDMVRVLICIESLCHRHTSLEAVSGLESNSRVFTVQVQGLLHLQSGQY
VSVFVDNSSGAVLTIQNTSSFSGMLLGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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