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Report for CCDS15581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15581.1 Public Mus musculus 1 Nvl 23 108 98 CCDS HistoryNCBI Gene:67459Re-query CCDS DB by CCDS ID:15581.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027797.8 ENSMUSP00000027797.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027797.8Link to Ensembl Protein Viewer:ENSMUSP00000027797.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027797Re-query CCDS DB by Protein ID:ENSMUSP00000027797
Original member Current member NCBI NM_026171.2 NP_080447.1 Accepted alive Link to Nucleotide Sequence:NM_026171.2Link to Protein Sequence:NP_080447.1Re-query CCDS DB by Nucleotide ID:NM_026171Re-query CCDS DB by Protein ID:NP_080447Link to BLAST:NP_080447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080447.1 855 Q9DBY8 855 100% 0 0

Chromosomal Locations for CCDS 15581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181093865 181093909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181094984 181095054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181097136 181097224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181099127 181099203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181101529 181101635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181105072 181105171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181106860 181106979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181109160 181109222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181112288 181112392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181114083 181114301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181117436 181117685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181120355 181120499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181123867 181123984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181126938 181127039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181129509 181129643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181130394 181130470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181130738 181130870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181134792 181135064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181136873 181136930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181139071 181139167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181139254 181139306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181142326 181142399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181144051 181144107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGAAGCCTAGACCCGGGGTTTTCGTAGACAGGAAACTGAAGCAGCGGGTCATTCAGTACCTCAGTAGTA
ACAGATGTGGCAAATATGTGGACACTGGAATCTTAGCATCCGACTTGCAAAGACTGTACAGTGTAGATTA
TGGTCGAAGAAAAAGAAATGCTTTCAGGATTCAGGTAGAAAAAGTATTTAGCATAATTAGTAGTGAGAAA
GAACTTAAGAATCTTAAAGAACTAGAAGATGGACATCTGGCAAAAAGAGCAAGACAAGATGAAGAGGATG
AGTACACTGAAAGCTATTCTGATGATGATTCGAACATGGAAGATTACCCAGATCCACAGTCAGCAAATCC
CATGAACAGCTCCCTGCTCTCTTTGTATCGGAGAGGAAACTCAGAGTCTGTTTCAACCACTCCGAAGTGG
GGACAGAGAGAAGCCACCACTTCCACGCCATTGCTGACGTCTAAAACGGGCTCCGTGCCATTGAAGACCC
CTGCCCGAGAATCTGAGGGAGGATGGTTTATTGACAAAACTCCCGGTGGAAAGAAAGAAAGTCTTCCCTT
GGACCTATCAGATGACCAAAGCAACTCTAAAAAGCAGGATTCTGAGATTCAGATTTTAAAAGACTCTTCT
CTTTTGGAAAGTGATAAGAAAAGGAAAGGTAGGGCAAAGGGCAAAGGAAACAAAAGAAAAACAGAGAATC
TTCAAGAAGTAGATGGAGAAATAGAAGCTCTTCTGCAAAAGAAAGCCAAAGCAAGGAGTACAGAGTTGCA
GATTTCCAATGTGAAGTTTGAAGATGTTGGAGGCAATGATGCAACATTAAAAGAAGTCTGCAAAATGCTC
ATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGTGGAGTTCTCCTGCATG
GACCACCAGGCTGTGGGAAGACATTACTTGCACACGCAATAGCAGGGGAACTTGACTTGCCGATTCTGAA
AGTGGCTGCTCCAGAGATTGTGTCCGGAGTTTCTGGAGAGTCTGAGCAGAAGCTCCGTGAGTTATTTGAC
CAGGCTGTGTCAAATGCACCATGTATTGTTTTCATTGATGAAATTGATGCAATTACCCCCAAAAGAGAAG
TTGCTTCAAAAGATATGGAACGAAGAATTGTAGCCCAGCTTCTAACCTGCATGGATGATCTGAATAACGT
GGCAGCTACAGCTCGGGTCCTAGTTATTGGAGCTACTAACAGGCCAGACTCATTGGATCCTGCTTTGAGA
CGTGCAGGAAGGTTTGACCGAGAAGTCTGCTTGGGTATCCCAGATGAGGCAGCCAGAGAAAGAATTCTCC
AAACGTTGTGCCGAAAACTGAGGCTTCCGGAAACTTTTAATTTTTGTCACTTAGCACACCTAACACCAGG
CTTTGTTGGTGCTGATCTGATGGCTCTTTGCCGAGAGGCGGCCATGTGTGCGGTCAATAGGGTCTTGATG
AAACAACAGGCGCAGCAGAAGAAAAAGCCTGAGATTGAAGGTTTGCCCTCTGAAGGAGACCAGGAGGAAA
GGCTGGGAGCTGAGCCCACTTCTGAAACACAGGATGAATTGCAAAGGCTGTTGGGGTTGCTAAGAGACCA
AGATCCCCTCTCAGAGGAACAGATGCAAGGACTGTGCATTGAATTGAACGATTTCATTGTTGCTCTAGCA
GAAGTCCAGCCTTCTGCCAAAAGGGAAGGCTTTGTAACTGTCCCTAATGTGACATGGGCTGATATTGGTG
CCCTGGAAGATATTAGAGATGAGCTTATAATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAG
AACTCTTGGTTTGGGGACTCCAGCTGGCATCCTCCTAGCTGGTCCTCCTGGGTGTGGAAAAACTCTGCTA
GCAAAGGCTGTGGCAAATGAGTCTGGACTAAATTTTATATCTGTCAAAGGCCCTGAATTATTGAATATGT
ATGTTGGTGAGAGTGAACGTGCTGTTCGACAAGTTTTTCAGCGAGCCAAGAACTCAGCCCCCTGCGTGAT
ATTTTTTGATGAAGTGGATGCTTTATGTCCTCGGAGATCAGACCGAGAAACAGGTGCTAGTGTTCGTGTG
GTGAATCAGCTGCTTACAGAGATGGATGGCTTAGAAACACGCCAGCAAGTTTTTATTTTGGCTGCCACCA
ATAGACCAGATATCATTGACCCTGCCATTCTGCGCCCAGGCCGCCTGGACAAAACGCTCTTTGTGGGTTT
GCCTCCCCCAGCAGACCGTGTTGCCATATTAAAGACTATTACAAAAAATGGCACCAAACCTCCACTGGAT
GAAGATGTAAATTTGGAAACAATTGCTAATGACCTTCGTTGTAATTGCTATACGGGTGCGGACCTCACTG
CTCTGGTACGGGAAGCTTCTCTCTGTGCCCTGAGACAAGAAATAACAGCTCAGAAGAATGGTGTTGGAGC
AGGTGAGCTTAAGGTCAGTCATAAGCACTTTGAAGACGCTTTCAAGAAAGTAAAACCATCCATATCAATA
AAGGATCAAGTGATGTATGAAGCTCTGCAGAGGTCCCTCAGTCAGTGA

Translation (855 aa):
MKPRPGVFVDRKLKQRVIQYLSSNRCGKYVDTGILASDLQRLYSVDYGRRKRNAFRIQVEKVFSIISSEK
ELKNLKELEDGHLAKRARQDEEDEYTESYSDDDSNMEDYPDPQSANPMNSSLLSLYRRGNSESVSTTPKW
GQREATTSTPLLTSKTGSVPLKTPARESEGGWFIDKTPGGKKESLPLDLSDDQSNSKKQDSEIQILKDSS
LLESDKKRKGRAKGKGNKRKTENLQEVDGEIEALLQKKAKARSTELQISNVKFEDVGGNDATLKEVCKML
IHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFD
QAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALR
RAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM
KQQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALA
EVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLGLGTPAGILLAGPPGCGKTLL
AKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRV
VNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLD
EDVNLETIANDLRCNCYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSISI
KDQVMYEALQRSLSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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