NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27084.1 Public Mus musculus 14 Dad1 23 108 98 CCDS HistoryNCBI Gene:13135Re-query CCDS DB by CCDS ID:27084.1Re-query CCDS DB by GeneID:13135See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022781.7 ENSMUSP00000022781.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022781.7Link to Ensembl Protein Viewer:ENSMUSP00000022781.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022781Re-query CCDS DB by Protein ID:ENSMUSP00000022781
Original member Current member EBI ENSMUST00000128231.1 ENSMUSP00000122366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128231.1Link to Ensembl Protein Viewer:ENSMUSP00000122366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128231Re-query CCDS DB by Protein ID:ENSMUSP00000122366
Original member Current member NCBI NM_001113358.1 NP_001106829.1 Accepted alive Link to Nucleotide Sequence:NM_001113358.1Link to Protein Sequence:NP_001106829.1Re-query CCDS DB by Nucleotide ID:NM_001113358Re-query CCDS DB by Protein ID:NP_001106829Link to BLAST:NP_001106829.1
Original member Current member NCBI NM_010015.4 NP_034145.1 Accepted alive Link to Nucleotide Sequence:NM_010015.4Link to Protein Sequence:NP_034145.1Re-query CCDS DB by Nucleotide ID:NM_010015Re-query CCDS DB by Protein ID:NP_034145Link to BLAST:NP_034145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106829.1 113 P61804 113 100% 0 0
NP_034145.1 113 P61804 113 100% 0 0

Chromosomal Locations for CCDS 27084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54242738 54242868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54253632 54253842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGTCGGCGTCTGTGGTGTCCGTCATCTCCCGGTTCCTGGAGGAGTACTTGAGCTCCACTCCGCAGCGGC
TGAAGTTGCTGGACGCCTATCTCCTTTATATACTGCTGACCGGGGCGCTGCAGTTCGGCTACTGTCTCCT
CGTGGGCACCTTCCCCTTCAACTCTTTCCTCTCTGGCTTCATCTCTTGTGTGGGCAGCTTCATCCTAGCG
GTTTGCCTGAGAATACAGATCAACCCCCAGAACAAGGCGGACTTCCAAGGCATCTCTCCGGAGCGAGCCT
TTGCTGACTTCCTCTTTGCCAGCACGATCCTGCACCTTGTCGTCATGAACTTCGTTGGCTGA

Translation (113 aa):
MSASVVSVISRFLEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILA
VCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH