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Report for CCDS17417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17417.1 Public Mus musculus 3 Ppid 23 108 98 CCDS HistoryNCBI Gene:67738Re-query CCDS DB by CCDS ID:17417.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029382.12 ENSMUSP00000029382.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029382.12Link to Ensembl Protein Viewer:ENSMUSP00000029382.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029382Re-query CCDS DB by Protein ID:ENSMUSP00000029382
Original member Current member NCBI NM_026352.4 NP_080628.1 Accepted alive Link to Nucleotide Sequence:NM_026352.4Link to Protein Sequence:NP_080628.1Re-query CCDS DB by Nucleotide ID:NM_026352Re-query CCDS DB by Protein ID:NP_080628Link to BLAST:NP_080628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080628.1 370 Q9CR16 370 100% 0 0

Chromosomal Locations for CCDS 17417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 79591473 79591557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79593610 79593750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79595202 79595308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79597685 79597873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79598792 79598914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79599052 79599158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79600258 79600399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79602272 79602358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79602443 79602485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79603031 79603119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTCCCACGCATCCCCGGCAGCCAAGCCCTCCAACTCCAAGAACCCGCGAGTCTTCTTTGACGTGGACA
TCGGCGGGGAGCGAGTTGGCCGAATTGTTTTAGAATTGTTTGCAGATATTGTTCCCAAAACTGCAGAAAA
TTTTCGTGCGTTGTGTACAGGAGAAAAAGGAACTGGGTCCACGACCGGGAAGCCTCTCCATTTTAAAGGA
TGCCCTTTCCACCGAATTATTAAGAAATTTATGATTCAGGGTGGAGACTTCTCAAATCAGAATGGGACAG
GTGGCGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAATTTTCATTATAAGCATGATCGGGAGGGTTT
GCTGAGCATGGCAAATGCAGGCCCCAATACGAATGGCTCTCAGTTCTTTATCACAACAGTTCCGACTCCT
CATCTGGACGGGAAACATGTGGTATTTGGTCAGGTCATAAAAGGACTAGGTGTGGCAAGGACGCTTGAAA
ATGTAGAGGTGAATGGTGAAAAACCTGCCAAACTCTGTGTTATTGCAGAATGTGGAGAATTGAAAGAAGG
GGATGACTGGGGAATCTTCCCCAAAGATGGCTCTGGTGACAGTCATCCAGACTTCCCTGAGGATGCAGAT
ATAGATTTAAAAGATGTAGATAAAATTTTATTAATATCTGAAGACTTAAAAAACATTGGAAATACTTTTT
TCAAGTCTCAGAACTGGGAGATGGCTATTAAAAAATATGCGAAGGTTTTAAGGTATGTGGATAGTTCAAA
GGCTGTTATTGAGAAAGCAGATAGATCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAATATTGGT
GCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTCTTGAAATGGACC
CTTCAAATACTAAAGCACTATACCGAAAAGCGCAAGGATGGCAAGGATTGAAAGAATATGATCAAGCATT
GGCTGATCTTAAGAAGGCACAGGAGATAGCCCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTC
AAACAAATGATAAAGGCACAGAAAGATAAAGAGAAGGCCGTGTATGCAAAAATGTTTGCTTAA

Translation (370 aa):
MSHASPAAKPSNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKG
CPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTP
HLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDAD
IDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVDSSKAVIEKADRSRLQPIALSCVLNIG
ACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKV
KQMIKAQKDKEKAVYAKMFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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