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Report for CCDS1784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1784.1 Public Homo sapiens 2 STRN 24 110 108 CCDS HistoryNCBI Gene:6801Re-query CCDS DB by CCDS ID:1784.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263918.9 ENSP00000263918.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263918.9Link to Ensembl Protein Viewer:ENSP00000263918.4Re-query CCDS DB by Nucleotide ID:ENST00000263918Re-query CCDS DB by Protein ID:ENSP00000263918
Original member Current member NCBI NM_003162.4 NP_003153.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003162.4Link to Protein Sequence:NP_003153.2Re-query CCDS DB by Nucleotide ID:NM_003162Re-query CCDS DB by Protein ID:NP_003153Link to BLAST:NP_003153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003153.2 780 O43815-1 780 100% 0 0

Chromosomal Locations for CCDS 1784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36849456 36849625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36849714 36849800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36851000 36851107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36855212 36855352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36857856 36858023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36861132 36861253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36867814 36867861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36869554 36869729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36877891 36878027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36883932 36884075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36886716 36886826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36893898 36894033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36899523 36899658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36902584 36902751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36905540 36905618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36916078 36916151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36925105 36925208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36966230 36966463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGACGAGCAGGCGGGTCCCGGCGTCTTCTTCAGCAACAACCACCCGGGCGCCGGCGGTGCCAAGGGGC
TCGGGCCTCTGGCGGAGGCTGCCGCGGCCGGCGACGGGGCGGCTGCGGCGGGGGCGGCCCGAGCCCAGTA
CAGTCTCCCGGGGATCCTGCACTTCCTGCAGCACGAGTGGGCCCGCTTCGAGGTGGAGAGAGCCCAGTGG
GAGGTGGAGCGGGCGGAGCTGCAGGCCCAGATTGCCTTCCTGCAGGGAGAAAGGAAGGGCCAAGAAAATT
TGAAGAAGGATCTTGTGAGGAGGATCAAAATGTTGGAGTATGCTCTTAAACAGGAAAGAGCCAAATACCA
CAAGTTGAAATACGGGACAGAATTGAATCAGGGAGATATGAAGCCTCCAAGCTATGATTCTGATGAAGGT
AATGAAACAGAAGTGCAGCCACAACAAAACAGCCAGTTAATGTGGAAACAAGGTCGACAACTACTCAGAC
AGTATCTACAGGAGGTGGGTTATACAGATACTATTCTAGATGTGAAATCTAAACGAGTGCGAGCTTTGTT
GGGCTTTTCAAGTGATGTCACGGACAGGGAAGATGACAAAAATCAGGACTCAGTTGTAAATGGCACAGAG
GCTGAAGTTAAAGAGACAGCAATGATTGCAAAATCTGAGTTAACAGATTCTGCCTCCGTGCTGGATAATT
TCAAATTCCTTGAAAGTGCAGCTGCAGATTTCAGTGATGAAGATGAAGATGATGATGTTGATGGAAGAGA
GAAAAGCGTCATTGATACTTCAACAATTGTTAGGAAAAAAGCATTGCCTGACAGCGGTGAAGATCGAGAT
ACAAAAGAAGCTCTAAAGGAGTTTGACTTCTTGGTTACATCAGAGGAAGGAGACAATGAATCTAGAAGTG
CAGGCGATGGAACAGACTGGGAAAAGGAAGACCAGTGTCTCATGCCTGAAGCCTGGAATGTGGACCAGGG
AGTAATTACCAAACTCAAGGAACAATACAAAAAGGAGAGAAAGGGGAAAAAGGGGGTGAAGAGGCCCAAT
AGGTCAAAACTACAAGATATGCTTGCTAATTTGAGAGATGTTGATGAACTTCCTTCATTGCAGCCATCTG
TGGGTTCACCTTCCAGACCCAGCAGCTCCAGGCTTCCTGAACATGAAATTAATAGGGCAGATGAAGTGGA
AGCATTGACATTTCCTCCTTCTTCTGGAAAGTCATTCATCATGGGAGCAGATGAAGCCCTTGAAAGTGAA
CTGGGACTTGGAGAACTAGCAGGCCTTACGGTGGCCAATGAAGCAGACTCACTAACTTATGATATAGCAA
ACAATAAAGATGCATTGAGGAAGACATGGAACCCTAAGTTTACATTGAGAAGTCACTTTGATGGCATCCG
AGCCCTTGCTTTCCATCCCATTGAGCCTGTTTTGATAACAGCATCAGAGGATCACACATTAAAAATGTGG
AATTTACAGAAAACAGCCCCAGCCAAAAAGAGCACTTCTCTTGATGTAGAACCTATCTATACATTCAGAG
CCCATAAAGGTCCAGTGCTTTGTGTGGTAATGAGCAGCAATGGTGAGCAGTGTTACAGTGGTGGTACTGA
TGGACTGATCCAGGGCTGGAATACCACTAATCCCAACATCGACCCCTATGATTCTTATGATCCTTCTGTT
TTACGAGGCCCTCTGCTAGGCCACACGGATGCAGTCTGGGGTTTGGCTTATAGTGCAGCACATCAGCGTT
TGTTGTCCTGTTCAGCAGATGGCACTCTGCGTTTATGGAATACAACTGAGGTTGCTCCAGCACTAAGTGT
ATTTAATGATACTAAAGAACTGGGAATCCCTGCCTCTGTGGATCTAGTGAGCAGTGACCCGAGCCATATG
GTAGCATCATTCAGCAAGGGATATACAAGCATTTTTAACATGGAAACACAACAACGCATTCTCACTTTAG
AATCCAATGTAGATACAACAGCCAACTCTTCCTGCCAAATAAATAGAGTCATCAGTCATCCTACTCTTCC
GATCAGCATCACTGCTCATGAAGACAGGCACATCAAATTCTATGATAACAATACAGGCAAACTGATCCAC
TCGATGGTAGCCCACCTAGAAGCTGTTACAAGTTTAGCAGTTGATCCCAATGGCCTTTACTTGATGTCTG
GCAGTCATGACTGTTCAATACGTTTATGGAATCTAGAAAGTAAGACGTGTATCCAAGAATTCACAGCTCA
TCGAAAAAAGTTTGAAGAATCGATTCATGATGTAGCTTTCCACCCATCCAAATGCTATATAGCCAGTGCT
GGAGCTGACGCACTGGCTAAAGTCTTTGTATGA

Translation (780 aa):
MDEQAGPGVFFSNNHPGAGGAKGLGPLAEAAAAGDGAAAAGAARAQYSLPGILHFLQHEWARFEVERAQW
EVERAELQAQIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDMKPPSYDSDEG
NETEVQPQQNSQLMWKQGRQLLRQYLQEVGYTDTILDVKSKRVRALLGFSSDVTDREDDKNQDSVVNGTE
AEVKETAMIAKSELTDSASVLDNFKFLESAAADFSDEDEDDDVDGREKSVIDTSTIVRKKALPDSGEDRD
TKEALKEFDFLVTSEEGDNESRSAGDGTDWEKEDQCLMPEAWNVDQGVITKLKEQYKKERKGKKGVKRPN
RSKLQDMLANLRDVDELPSLQPSVGSPSRPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGADEALESE
LGLGELAGLTVANEADSLTYDIANNKDALRKTWNPKFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMW
NLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGEQCYSGGTDGLIQGWNTTNPNIDPYDSYDPSV
LRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFNDTKELGIPASVDLVSSDPSHM
VASFSKGYTSIFNMETQQRILTLESNVDTTANSSCQINRVISHPTLPISITAHEDRHIKFYDNNTGKLIH
SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASA
GADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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