NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23328.1 Public Mus musculus 9 Cgnl1 23 108 98 CCDS HistoryNCBI Gene:68178Re-query CCDS DB by CCDS ID:23328.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072899.8 ENSMUSP00000072672.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072899.8Link to Ensembl Protein Viewer:ENSMUSP00000072672.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072899Re-query CCDS DB by Protein ID:ENSMUSP00000072672
Original member Current member EBI ENSMUST00000122065.1 ENSMUSP00000112479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122065.1Link to Ensembl Protein Viewer:ENSMUSP00000112479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122065Re-query CCDS DB by Protein ID:ENSMUSP00000112479
Original member NCBI NM_001304362.1 NP_001291291.1 Updated not alive Link to Nucleotide Sequence:NM_001304362.1Link to Protein Sequence:NP_001291291.1Re-query CCDS DB by Nucleotide ID:NM_001304362Re-query CCDS DB by Protein ID:NP_001291291
Current member NCBI NM_001304362.2 NP_001291291.1 Accepted alive Link to Nucleotide Sequence:NM_001304362.2Link to Protein Sequence:NP_001291291.1Re-query CCDS DB by Nucleotide ID:NM_001304362Re-query CCDS DB by Protein ID:NP_001291291Link to BLAST:NP_001291291.1
Original member NCBI NM_026599.5 NP_080875.3 Updated not alive Link to Nucleotide Sequence:NM_026599.5Link to Protein Sequence:NP_080875.3Re-query CCDS DB by Nucleotide ID:NM_026599Re-query CCDS DB by Protein ID:NP_080875
Current member NCBI NM_026599.6 NP_080875.3 Accepted alive Link to Nucleotide Sequence:NM_026599.6Link to Protein Sequence:NP_080875.3Re-query CCDS DB by Nucleotide ID:NM_026599Re-query CCDS DB by Protein ID:NP_080875Link to BLAST:NP_080875.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291291.1 1297 Q6AW69-4 1297 100% 0 0
NP_080875.3 1297 Q6AW69-4 1297 100% 0 0

Chromosomal Locations for CCDS 23328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71629260 71629392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71630476 71630639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71630862 71630970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71631731 71631855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71632598 71632681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71641359 71641448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71645492 71645653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71650222 71650392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71651234 71651386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71655293 71655397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71656046 71656252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71705148 71705360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71715323 71715458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71716408 71716556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71717396 71717497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71721596 71721701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71723534 71723628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71724478 71726067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3894 nt):
ATGGAGCTGTATTTTGGCGAATACCAACACGTACAGCAGGAGTACGGGGTACACCTGAGACTTGCCAGTG
GTGACACTCCAAAGCCAAGGAATTCCCAGCCCTCAAAGGCAGGCTCCTATGGTGTCAGCATCAGGGTCCA
GGGAATTGATGGCCACCCTTATATAGTCCTGAATAACACTGAGCGGTGTCTAGCAGGCACACCTTTCCCA
GAAAACGCGCCATCGTTTCCATCTTCAGTGATAAATAACCTGTCCCTACATCCAAGCAATGGAACCGTGT
TGAAGGAGAACACTCCGGAGGAACTGCAGCTTCCAGAAAACCCGTACCTGCAAACCAGCCCGCTAAGAGG
CCAGAAGCAGTTCTCCCTCCACGAGGGCAGGAATGGAGTTCTAGAACGCAAAGACGGGCCCACGAAGCTG
CCCCATGTGCTCAACTTCCAGAGGCACCCGGAGCTTCTGCAGCCCTATGACCCAGAAAAGAATGAGGTGA
ACGCAAAGAAGCATCACCCTCCCGAGAGTCCCTGGCTGAGAAATGCAACAGAGGACGGGACCAACTGTAA
GAAGTCCCGGAACTGCTTCCCCAAATCCTACGGTTCCCAGCCCAACAGCCCTACTTCGGAAGATTTAGCC
AAGACCAACATGACAGCGATCCGTCTCTGCAGCTCTGTGGTCATAGAAGACCCCCAAAAGCAGACCTCAG
TGTGCGTGAACGTTCAGAGGTGCGCCAAGGAGGGGGTGGGAGAGGAGACCCTTTCCCCTCGACGGAAATC
CCCAACTGCCCCCAGCCCACAGGCCTATTCTGAAACCAAGAAAAACAGGCCAGATGTGCTACCCTTCCGG
CGACAAGATTCCGCAGGACCCATCCTGGATGGAGCTCGGTCACGCAGGTCCTCTTCGTCATCCACGACTC
CTACTTCTGCCACTTCCTTGTACAAATTTTTACTTGATGATCAGGAATGCGCCATTCATGCCGACAGCGT
CAACCGCCATGAAAACAGAAGGTATATTCCCTTCTTGCCAGGAACTGGGCGGGATATCGACACCTGCTCA
ATTCCTGGTGTGGACCAGTTAATTGAAAAATTTGACCAAAAGCCTGGCCTTCAGAGAAGAGGAAGGTCTG
GGAAGAGAAACAGGATCAATCCCGACGACAGGAAAAGATCCCGAAGTGTAGATAGTGCCTTTCCATTTGG
TCTCCAGGGAAACACAGAATACCTCACCGAGTTCAGCAGGAACCTGGGCAAGTCTAGCGAACACCTCCTT
CGGCCATCCCAGGTCTTCCCGCAGAGGTCAGTGGCCCAGGAGCACCGTGGGAAGCACAGTCCCAGCAGCC
CGCCCGCAAAGCTGCAGGGCGCTCAAGGTGCCCACCCCAAGCCTCCCCTGCAGAACAAAGATGGGAAAGT
TCTGAACAAAGGAAGGCAGGAAAGCACGGGGGCATGTGCCCCCTCCCTGCCAGCACCGAATAAAAAAGAG
GAAGAAATCAAAATAGCCACTGCCACGTTGATGTTACAGAACCGGGCGGTGGCTGCCACATCGGATTCTG
GTGCCAAGAAAATTTCAGTGAAGACATTTCCTTCCGACTCCAGCACTCAGGCCACACCAGATCTCTTAAA
GGGCCAGCAGGAGCTCACACAACAAACGAACGAGGAGACCGCCAAGCAGATCCTTTACAATTACCTCAAA
GAAGGAGGCACAGACAATGAGGATGCCACCAAAAGGAAAGTGAACCTGGTCTTTGAGAAAATCCAGACTT
TGAAGTCCAGAGCAGCAGGGAGTGCCCAAGGAAGCAATCAAGCTCCGAATTCTCCCTCTGAAGGCAACAG
TCTATTGGATCAGAAGAACAAATTGATCCTAGAAGTGTCTGAACTACAGCAGCAACTGCAACTGGAGATG
AAGAACCAACAGAACATCAAGGAGGAGCGAGAAAGAATGAGAGAGGATTTAGAAGAGCTGCGAGTCCGGC
ACCAGAGCCAAGTGGAGGAGACGGCCACCCTGCAGAGACGGCTGGAGGAAAGTGAAGGCGAGCTGAGGAA
GAGCTTGGAAGAGCTGTTCCAAGTGAAGATGGAGCGTGAACAGCACCAGACTGAGATCAGAGACCTGCAG
GACCAGCTGTCGGAAATGCATGATGAGCTAGACAGCACCAAGCGATCCGAGGACAGGGAGAAGGGAGCCC
TGATTGAGGAGCTCCTGCAAGCCAAGCAGGACCTTCAAGATCTGCTCATTGCCAAAGAGGAACAGGAAGA
TCTCTTGAGGAAGCGGGAGCGGGAGCTGACTGCCTTGAAGGGCGCCTTGAAGGAGGAGGTTTCCAGCCAT
GACCAGGAGATGGATAAGCTGAAGGAACAGTACGATGCTGAGCTGCAGGCCCTCAGGGAGAGTGTGGAGG
AGGCAACCAAGAATGTTGAGGTCCTGGCCAGCAGGAGCAACTCCTCAGAGCAGAGCCAGGCGGAGGCTGA
CCTGCGTGAGAAAGTGCTGAAGGAGGAGAATGAGAAGCTGCAGGGGAGGATTGCGGAGCTGGAGCGCAGG
GCAGCCCAGCTACAGAGGCAGATGGAGGATGTGAAGGGTGACGAGGCCCAAGCAAAGGAGACACTCCGAA
AGTGTGAGAGTGAAGTACAGCAGCTGGAGGAAGCCCTTGTGCATGCCAGAAAGGAAGAAAAAGAAGCCAC
ATGTGCCAGAAGGGCGCTGGAGAAGGAGCTGGAGCAAGCTCGGAGAGAGCTGAGCCAGGTCTCCCAGGAG
CAGAAGGAACTCCTGGAGAAACTCCGGGACGAGGCGGAGCAGAAGGAGCAGCTGCGAAAGCTGAAGAACG
AGATGGAGAGCGAGCGGTGGCACCTGGACAAGACCATCGAGAAGCTGCAGAAGGAGATGGCCGACATTGC
TGAGGCCTCCCGCACATCCTCTTTGGAGCTGCAGAAGCAGCTGGGCGAGTATAAGGAGAAGAACCGCCGG
GAGCTTGCGGAAATGCAGACACAACTGAAGGAGAAATGCCTGGAAGTGGAAAAGGCCAGACTGGCAGCCT
CGAAGATGCAGGATGAGTTACGCCTCAAGGAGGAAGAGTTGCAGGACTACCAGCGAGCTGAGGAGGAGGC
GCTCACAAAACGGCAGCTTCTGGAGCAGTCGCTGAAGGACCTGGAGTATGAGCTGGAGGCCAAGAGCCAC
CTCAAGGATGACCGCAGCCGACTCATCAAGCAGATGGAGGACAAGGTGTCCCAATTGGAGATTGAATTGG
AAGAAGAAAGAACCAACGCTGACTTGCTGTCGGAGAGGATCACGTGGAGCAGGGAACAGATGGAGCAGAT
GAGGAGCGAGCTTCTTCAGGAGAAAGCTGCCAAGCAAGACTTAGAGTGTGACAAGATTTCCCTAGAGAGA
CAGAACAAAGACTTAAAGAGCCGGATTATCCACCTGGAAGGTTCCTACAGGTCCAGCAAGGAGGGCCTGG
TGGTGCAGATGGAGGCCAGGATTGCAGAGCTGGAGGACCGGCTGGAGAATGAGGAGAGGGATCGGGCCAA
CCTGCAGCTCAGCAACCGAAGGCTGGAGCGGAAGGTGAAGGAGCTGGTGATGCAGGTGGATGATGAGCAT
CTGTCACTGACGGACCAGAAGGACCAGCTGAGCTTGCGCCTGAAAGCCATGAAGCGCCAGGTGGAGGAGG
CTGAAGAGGAGATCGACCGACTGGAAAGTTCTAAGAAGAAGCTGCAGAGGGAGCTGGAGGAGCAGATGGG
GGTGAATGAGCAGCTGCAGGGGCAGCTCAACTCTCTGAAGAAGGGCTTAAGGCTTAAGACACTGTCTAGT
AAAGTACTGGACGACTCGGACGACGACGACCTCAGCAGTGATGCGGGAAGCCTCTACGAAGCCCCACTGA
GCTATGCCTTTCCCAAAGACAGCACTATCGCCAGCCAGATCTGA

Translation (1297 aa):
MELYFGEYQHVQQEYGVHLRLASGDTPKPRNSQPSKAGSYGVSIRVQGIDGHPYIVLNNTERCLAGTPFP
ENAPSFPSSVINNLSLHPSNGTVLKENTPEELQLPENPYLQTSPLRGQKQFSLHEGRNGVLERKDGPTKL
PHVLNFQRHPELLQPYDPEKNEVNAKKHHPPESPWLRNATEDGTNCKKSRNCFPKSYGSQPNSPTSEDLA
KTNMTAIRLCSSVVIEDPQKQTSVCVNVQRCAKEGVGEETLSPRRKSPTAPSPQAYSETKKNRPDVLPFR
RQDSAGPILDGARSRRSSSSSTTPTSATSLYKFLLDDQECAIHADSVNRHENRRYIPFLPGTGRDIDTCS
IPGVDQLIEKFDQKPGLQRRGRSGKRNRINPDDRKRSRSVDSAFPFGLQGNTEYLTEFSRNLGKSSEHLL
RPSQVFPQRSVAQEHRGKHSPSSPPAKLQGAQGAHPKPPLQNKDGKVLNKGRQESTGACAPSLPAPNKKE
EEIKIATATLMLQNRAVAATSDSGAKKISVKTFPSDSSTQATPDLLKGQQELTQQTNEETAKQILYNYLK
EGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEM
KNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQ
DQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSH
DQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERR
AAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQE
QKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRR
ELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSH
LKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLER
QNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEH
LSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLKTLSS
KVLDDSDDDDLSSDAGSLYEAPLSYAFPKDSTIASQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH