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Report for CCDS40159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40159.1 Public Mus musculus 7 2310057M21Rik 23 108 98 CCDS HistoryNCBI Gene:68277Re-query CCDS DB by CCDS ID:40159.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059438.10 ENSMUSP00000050128.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059438.10Link to Ensembl Protein Viewer:ENSMUSP00000050128.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000059438Re-query CCDS DB by Protein ID:ENSMUSP00000050128
Original member Current member NCBI NM_026655.4 NP_080931.1 Accepted alive Link to Nucleotide Sequence:NM_026655.4Link to Protein Sequence:NP_080931.1Re-query CCDS DB by Nucleotide ID:NM_026655Re-query CCDS DB by Protein ID:NP_080931Link to BLAST:NP_080931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080931.1 444 Q9D2Q3 444 100% 0 0

Chromosomal Locations for CCDS 40159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131343570 131343804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131350651 131351102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131357460 131357666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131360889 131360961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131361733 131361936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131362508 131362671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGAGACCGCGATCGAAGACGCGGGACTGGACCGCGGCCCGACGCTGACCTCGTCCTGGGATGCGGCGT
GCGGGGCGCTGACCCAAAGCCTTTTTCTTACCCGGACTGGGCCACGTGCCCAAGACTTGGACTTCGAGCA
GCTACTGGAGCCGCCAGCTCCGAGCCAGGATCCGGTTAGTCTGAAAAGCAGCCTGAGCCCCCGAGATGAA
AACCCCTGCTTCATTTACCTGAACTGTGGCCCTAATGGGGGTGAAGAAATCCTTTCGGTTGGCGTTCTGA
GTTCAGCAAGAAACATGGAAGTATACTTAGGAGAGGAGTATTGTGGAACCAGTCGAGGCAAGACTGCCTG
CACTGTCCTGGATGACAGTGAACATGAAAAGATCTTGTTATACAAAAAATACCTAAAATTGGATTCTCCC
ACGCATGCCTGTAAAATAAAGCTGTTGTCCTTCGGGGAGAAGCAGTGTGTGCTTGTCAGTAAGGTGGTGG
TGCACTTGAGGCCACGGTCTGCAGATCCTTCACCGCGCTCTGCTGCTCTGGGATCACGGATAGACCTTGA
CAACATCCAAACCATAATGGAGTCCATGGGGTCCAGGTTATCGCCTGGAGCGCAGCAGCTCATGAGCATG
ATTAGGTTTCAGCAGCAGAATCGTCTTCCCATCGGGGATCAGCTTCAGTCGGTGTTGGGAAGCGCAGGAC
ACAAGCATCTGATGGCGCTGCAGTCGTCACCGTCTCCAGCAGTCTTAGACAAGGCATCCTCTACACCTTT
CCCTTTTAGAACTGGATTGACCCCTTCAGCCATCACTGAAAATTTAAAGGCTCTTATTGATAAAAGCGCA
CAGCCATCTGGAGAAGGAAATACCACAAACCACGATGAGGGTCACCTTATGCCACAAAACCATTCCCTTG
AAAGTGATCTTAAAAACGCAGTGTCTTCTTTCTTACCAAAGAAGGCAAGCGGCAGCTCAAGTGTGCCCAG
CTCTGAGCTGCTGCCTTTTCTCCAGAACTTATGTAGTCAGGTCAACCATCTCCGCGTGGGACATAATGCC
AGGTGGCAAGAAAACATCTCCAAGCCCCGAGAGGGCATGGTCGGGGTTCCGATGGAAGAGCAGCCTGTTT
GCTCCTACTTGGAAAAGATTCTTTCTAAAAACATGGAACTGATGGAAAAGAAGCTTATGGACCACATTGA
TGAGAGGATCTATCAGCTCCAGGAACACATAGATGCTAAAATGGCTTTGTTAGTGGACTTGCTGCGAGGC
CCCAACTCCCCACCCCCAGGGATGCCTCTAAGACACTATGACTCCAGAGAAAGACTTTCCAATGGAGAAA
GATAA

Translation (444 aa):
METAIEDAGLDRGPTLTSSWDAACGALTQSLFLTRTGPRAQDLDFEQLLEPPAPSQDPVSLKSSLSPRDE
NPCFIYLNCGPNGGEEILSVGVLSSARNMEVYLGEEYCGTSRGKTACTVLDDSEHEKILLYKKYLKLDSP
THACKIKLLSFGEKQCVLVSKVVVHLRPRSADPSPRSAALGSRIDLDNIQTIMESMGSRLSPGAQQLMSM
IRFQQQNRLPIGDQLQSVLGSAGHKHLMALQSSPSPAVLDKASSTPFPFRTGLTPSAITENLKALIDKSA
QPSGEGNTTNHDEGHLMPQNHSLESDLKNAVSSFLPKKASGSSSVPSSELLPFLQNLCSQVNHLRVGHNA
RWQENISKPREGMVGVPMEEQPVCSYLEKILSKNMELMEKKLMDHIDERIYQLQEHIDAKMALLVDLLRG
PNSPPPGMPLRHYDSRERLSNGER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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