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Report for CCDS23599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23599.1 Public Mus musculus 9 Stt3b 23 108 98 CCDS HistoryNCBI Gene:68292Re-query CCDS DB by CCDS ID:23599.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035010.9 ENSMUSP00000035010.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035010.9Link to Ensembl Protein Viewer:ENSMUSP00000035010.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035010Re-query CCDS DB by Protein ID:ENSMUSP00000035010
Original member Current member NCBI NM_024222.3 NP_077184.2 Accepted alive Link to Nucleotide Sequence:NM_024222.3Link to Protein Sequence:NP_077184.2Re-query CCDS DB by Nucleotide ID:NM_024222Re-query CCDS DB by Protein ID:NP_077184Link to BLAST:NP_077184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077184.2 823 Q3TDQ1 823 99.8785% 0 1

Chromosomal Locations for CCDS 23599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 115243965 115244045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115246045 115246257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115248505 115248618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115250779 115250952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115251678 115251849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115252499 115252686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115253833 115254044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115254789 115254943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115256133 115256181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115257436 115257582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115258462 115258560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115266094 115266193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115267310 115267375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115276704 115276991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115280411 115280519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 115309752 115310056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGCGGAGCCCTCGGCCCCGGAGAGCAAGCACAAGTCGTCCCTCAACTCGTCCCCGTGGAGCGGCCTCA
TGGCTCTGGGGAACAGCCGCCACGGGCACCATGGGCCCGGAACCCAGAGCGCGTCCAGGGCGGCGGCGCC
GAAGCCGGGGCCCCCCGCGGGGCTGTCCGGGGGCTTGTCGCAGCCGGCCGGGTGGCAGTCGTTGCTCTCC
TTCACCATCCTCTTCCTGGCCTGGCTGGCCGGCTTCAGCTCGCGCCTCTTCGCCGTCATCCGCTTCGAGA
GCATCATCCACGAGTTCGACCCGTGGTTTAACTATAGATCAACACATCATCTTGCATCTCATGGATTCTA
TGAGTTTCTAAATTGGTTTGATGAAAGAGCATGGTACCCACTGGGAAGAATAGTGGGTGGCACCGTTTAC
CCAGGGTTGATGATAACAGCTGGCCTTATTCATTGGATTTTAAATACATTGAACATAACAGTTCACATAA
GAGATGTGTGTGTATTCCTTGCACCAACTTTTAGCGGCCTTACATCCATATCTACGTTCCTGCTAACTAG
AGAACTGTGGAACCAAGGAGCAGGACTTCTAGCTGCTTGCTTCATTGCTATCGTACCAGGGTACATATCT
CGGTCAGTGGCGGGATCCTTTGATAATGAAGGCATTGCCATTTTTGCGCTTCAGTTCACTTACTACTTAT
GGGTAAAGTCTGTGAAGACCGGGTCTGTGTTCTGGACAATGTGCTGCTGCTTGTCATATTTCTACATGGT
CTCTGCGTGGGGAGGTTATGTGTTCATCATCAACCTCATCCCTCTCCATGTGTTTGTGTTGCTGCTGATG
CAGAGGTACAGCAAGAGAGTCTACATAGCATATAGCACTTTCTACATTGTGGGTTTAATATTATCCATGC
AGATACCTTTTGTGGGATTTCAGCCAATCAGAACAAGCGAGCACATGGCAGCTGCAGGTGTCTTTGCGCT
GCTGCAAGCTTACGCTTTTTTGCAGTATCTGAGAGACCGGTTGACAAAACAGGAGTTCCAGACCCTTTTC
TTTTTGGGTGTCTCACTAGCTGCAGGCGCTGTGTTCCTTAGTGTCATCTATCTGACATACACAGGTTATA
TTGCACCATGGAGTGGCAGGTTTTATTCACTATGGGATACTGGGTATGCAAAAATACACATTCCAATTAT
TGCATCAGTGTCTGAACATCAGCCTACGACATGGGTGTCTTTCTTCTTTGATCTACATATTCTTGTATGT
ACCTTCCCAGCAGGCCTATGGTTCTGCATCAAAAATATCAACGATGAAAGAGTATTTGTCGCTCTGTATG
CGATCAGTGCTGTCTACTTTGCCGGAGTGATGGTGCGGCTGATGCTGACTCTGACCCCGGTCGTCTGCAT
GCTGTCGGCCATCGCCTTCTCCAATGTTTTTGAGCACTATTTGGGGGATGACATGAAAAGGGAAAACCCA
CCTGTGGAGGACAGCAGTGATGAGGATGACAAAAGAAACCCAGGAAACTTGTATGACAAGGCAGGTAAAG
TGAGGAAGCATGTGACAGAGCAAGAGAAACCTGAAGAGGGCTTGGGCCCCAACATCAAAAGCATTGTGAC
CATGCTGATGCTCATGCTCCTGATGATGTTCGCGGTCCACTGCACGTGGGTCACAAGCAACGCCTACTCC
AGTCCAAGTGTGGTCCTTGCCTCCTACAATCATGATGGTACCAGGAATATATTAGATGATTTTAGAGAAG
CGTACTTTTGGCTGAGACAAAACACGGATGAACACGCCCGGGTCATGTCGTGGTGGGACTACGGCTATCA
GATTGCTGGCATGGCCAACAGGACCACTCTGGTGGATAACAACACCTGGAACAACAGCCACATCGCACTG
GTCGGAAAAGCTATGTCTTCCAATGAAACGGCCGCCTATAAAATCATGAGGTCCCTTGATGTCGATTATG
TGTTGGTTATTTTCGGAGGAGTGATTGGCTATTCCGGGGACGATATCAACAAGTTCCTCTGGATGGTCAG
GATAGCTGAAGGGGAGCATCCCAAAGACATCCGGGAAGGTGACTATTTCACCCAGCAGGGAGAGTTCCGA
GTAGACAAAGCTGGGTCTCCTACTCTGTTAAACTGCCTTATGTATAAAATGTCATACTACAGATTTGGAG
AAATGCAGCTAGATTTTCGCACTCCCCCAGGCTTTGACCGAACACGTAATGCTGAGATTGGAAATAAAGA
CATTAAATTCAAGCATTTGGAGGAAGCTTTTACATCAGAGCACTGGCTTGTCAGGATATATAAAGTGAAA
GCACCTGACAACAGGGAGACACTAGGTCACAAACCTCGAGTCACCAACATCGTCCCCAAACAGAAGTATT
TGTCAAAGAAGACTACTAAAAGGAAGCGTGGCTACGTTAAAAATAAGCTAGTGTTTAAGAAAGGCAAGAA
GACCTCTAAGAAGACTGTTTAA

Translation (823 aa):
MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGTQSASRAAAPKPGPPAGLSGGLSQPAGWQSLLS
FTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDERAWYPLGRIVGGTVY
PGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLTRELWNQGAGLLAACFIAIVPGYIS
RSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLM
QRYSKRVYIAYSTFYIVGLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLF
FLGVSLAAGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVC
TFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGDDMKRENP
PVEDSSDEDDKRNPGNLYDKAGKVRKHVTEQEKPEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYS
SPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIAL
VGKAMSSNETAAYKIMRSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIREGDYFTQQGEFR
VDKAGSPTLLNCLMYKMSYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVK
APDNRETLGHKPRVTNIVPKQKYLSKKTTKRKRGYVKNKLVFKKGKKTSKKTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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