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Report for CCDS16967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16967.1 Public Mus musculus 2 Aar2 23 108 98 CCDS HistoryNCBI Gene:68295Re-query CCDS DB by CCDS ID:16967.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029158.3 ENSMUSP00000029158.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029158.3Link to Ensembl Protein Viewer:ENSMUSP00000029158.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029158Re-query CCDS DB by Protein ID:ENSMUSP00000029158
Original member Current member EBI ENSMUST00000109570.7 ENSMUSP00000105198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109570.7Link to Ensembl Protein Viewer:ENSMUSP00000105198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109570Re-query CCDS DB by Protein ID:ENSMUSP00000105198
Original member Current member NCBI NM_001164818.1 NP_001158290.1 Accepted alive Link to Nucleotide Sequence:NM_001164818.1Link to Protein Sequence:NP_001158290.1Re-query CCDS DB by Nucleotide ID:NM_001164818Re-query CCDS DB by Protein ID:NP_001158290Link to BLAST:NP_001158290.1
Original member Current member NCBI NM_026661.4 NP_080937.3 Accepted alive Link to Nucleotide Sequence:NM_026661.4Link to Protein Sequence:NP_080937.3Re-query CCDS DB by Nucleotide ID:NM_026661Re-query CCDS DB by Protein ID:NP_080937Link to BLAST:NP_080937.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158290.1 384 Q9D2V5 384 100% 0 0
NP_080937.3 384 Q9D2V5 384 100% 0 0

Chromosomal Locations for CCDS 16967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156550693 156551449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156555827 156556056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156566865 156567032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGTCTTCCATGCAGATGGATCCAGAGTTAGCCAAGCAGCTCTTCTTTGAAGGAGCCACGGTGGTCATTC
TG
AACATGCCCAAGGGGACAGAGTTTGGCATTGACTACAACTCTTGGGAGGTGGGGCCCAAGTTCCGGGG
T
GTGAAGATGATTCCCCCTGGCATCCACTTCCTGTACTACAGCTCTGTGGACAAGGCCAATCCCAGGGAG
GTG
GGCCCTCGCATGGGCTTCTTCCTCAGCCTGAAGCAGCGGGGGCTGACAGTCCTGCGCTGGAATGCAG
TC
CAGGAAGAAGTAGACCTGTCTCCAGCTCCAGAGGCTGAAGTAGAAGCTATGAGAGCCAATCTCCCAGA
C
CTAGACCAGTTTCTGGGACCTTACCCATATGCTACACTCAAGAAATGGATCTCACTCACCAACTTCATC
AGT
GAGGCCACCATGGAGAAGCTGCAGCCTGAGAGCAGGCAGATCTGCGCCTTCTCAGATGTGCTGCCTG
TG
CTTTTCATGAAGCACACCAAGGACAGGGTGGGGCAGAACCTGCCCCTCTGCGGCACCGAGTGCAGAAG
C
TACCAAGAGGGCCTAGCCCGGCTGCCCGAGATGAGGCCCAGGGCTGGGACAGAGATCCGCTTCTCAGAG
TTG
CCCACTCAGATGTTCCCAGCAGGAGCCACACCAGCAGAGATCACCAGGCACAGCATGGACTTGAGCT
AT
GCCCTCGAAACTGTGCTCAGCAAGCAGTTCCCTGGCAACCCCCAGGATGTGCTTGGTGAGCTCCAGTT
T
GCCTTTGTGTGCTTCTTGCTGGGCAATGTGTATGAGGCATTTGAGCACTGGAAGCGGCTCCTGAACCTC
CTG
TGTCGGTCTGAATCTGCCATGGGGAAGTACCACGCCCTGTACATCAGCCTCATCTCCATCCTGTACC
AC
CAGCTTGGTGAGATCCCTGCTGACTTCTTTGTGGACATTGTCTCCCAGGACAACTTCCTCACCAGTAC
C
TTACAGGTTTTCTTTTCTTCTGCCTGCAGTATTGCTGTGGAAGCCACCCTGAGGAAGAAAGCTGAGAAG
TTC
CAAGCCCACCTGACTAAGAAGTTCCGCTGGGACTTCACTTCAGAGCCAGAGGACTGTGCCCCAGTGG
TG
GTGGAGCTCCCCGAGGGCATCGAGACGGCCTAA


Translation (384 aa):
MSSMQMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDKANPRE
V
GPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLPDLDQFLGPYPYATLKKWISLTNFI
S
EATMEKLQPESRQICAFSDVLPVLFMKHTKDRVGQNLPLCGTECRSYQEGLARLPEMRPRAGTEIRFSE
L
PTQMFPAGATPAEITRHSMDLSYALETVLSKQFPGNPQDVL
GELQFAFVCFLLGNVYEAFEHWKRLLNL
L
CRSESAMGKYHALYISLISILYHQLGEIPADFFVDIVSQDNFLTSTLQ
VFFSSACSIAVEATLRKKAEK
F
QAHLTKKFRWDFTSEPEDCAPVVVELPEGIETA




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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