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Report for CCDS28512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28512.1 Public Mus musculus 17 Tsr3 23 108 98 CCDS HistoryNCBI Gene:68327Re-query CCDS DB by CCDS ID:28512.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063574.6 ENSMUSP00000068511.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063574.6Link to Ensembl Protein Viewer:ENSMUSP00000068511.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063574Re-query CCDS DB by Protein ID:ENSMUSP00000068511
Original member Current member NCBI NM_026676.3 NP_080952.2 Accepted alive Link to Nucleotide Sequence:NM_026676.3Link to Protein Sequence:NP_080952.2Re-query CCDS DB by Nucleotide ID:NM_026676Re-query CCDS DB by Protein ID:NP_080952Link to BLAST:NP_080952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080952.2 323 Q5HZH2 323 100% 0 0

Chromosomal Locations for CCDS 28512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25240253 25240364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25240444 25240663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25241064 25241257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25241688 25241861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25242159 25242222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25242454 25242661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGCCGCAAGAAAGTTGCTCGCGGATCCAGGAAAGAGAGCGGTCGTGTTCGGCGACCCTCTGGCCGCT
CTCTGGATGCTTTCGCTGAAGAGGTGGGCGCTGCGCTGCGTGCATCCGTGCAGCCCGAGGAGGCCGAGGA
CCAGGGCGGCCCGGGCCCTGCGGCGCTGCCTTGTGCCTTGGCTATGTGGGAGCTTGGTCACTGCGACCCC
AAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGGTCTGGTGCGCTGCCTGCGCCTGAGCCAAAGGTTTG
GCGGTCTGGTGCTCAGCCCAGTAGGCACTGAGTACGTGTCTCCGGCAGACAGACAGCTGGTGGCACAGTC
AGGGGTCGCAGTCATAGACTGCTCCTGGGCCAAACTGGACGACACACCCTTTCAGAAGATGCGAGGGAGC
CACTTGCGGCTCCTGCCTTACCTCGTAGCTGCCAACCCTGTAAACTATGGCCGGCCCTGCAAACTTTCCT
GTGTGGAAGCTTTCGCTGCTGCCTTCTGCATCGTAGGCTTTTCAGACCTTGCTGTCATTTTGCTTCGGAA
GTTTAAGTGGGGCAAGGGCTTCCTGGACCTGAACCGGGAGCTCCTGGATAAGTACGCAGCTTGCCGTGGC
CCGGAGGAGGTGTTGCAGGCTGAACAGGGGTACTTGGCTAGCACCAGGGACACGCCTGAAGAGGACATCG
ATCCCTTTGACGTGGACTCAGGGCGGGAGTTTGTGAATCTCAACAGGCCCGTGGCCAGCACCCGGCTACC
TGAGGACATGGATGACACTGATGGGTCTGAGGAGCACAGTGAAGATTCTGAGGAGGACAGTGATGAGTGT
GAGGAACCAGGACCTGGTGCTAATGGAGGAGACAGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAG
AGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGGATCAAGAAACGACAGAGAGACTGA

Translation (323 aa):
MGRKKVARGSRKESGRVRRPSGRSLDAFAEEVGAALRASVQPEEAEDQGGPGPAALPCALAMWELGHCDP
KRCTGRKLARLGLVRCLRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGS
HLRLLPYLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYAACRG
PEEVLQAEQGYLASTRDTPEEDIDPFDVDSGREFVNLNRPVASTRLPEDMDDTDGSEEHSEDSEEDSDEC
EEPGPGANGGDSNYSGAEETPEQEAQARDSTEIWKGIKKRQRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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