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Report for CCDS40139.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40139.2 Public Mus musculus 7 Tbc1d10b 23 108 98 CCDS HistoryNCBI Gene:68449Re-query CCDS DB by CCDS ID:40139.2See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 40139.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40139.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120705.2 ENSMUSP00000113307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120705.2Link to Ensembl Protein Viewer:ENSMUSP00000113307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120705Re-query CCDS DB by Protein ID:ENSMUSP00000113307
Original member Current member NCBI NM_144522.5 NP_653105.3 Accepted alive Link to Nucleotide Sequence:NM_144522.5Link to Protein Sequence:NP_653105.3Re-query CCDS DB by Nucleotide ID:NM_144522Re-query CCDS DB by Protein ID:NP_653105Link to BLAST:NP_653105.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653105.3 798 Q8BHL3 798 100% 0 0

Chromosomal Locations for CCDS 40139.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127198571 127199212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127199298 127199452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127199733 127199922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127200095 127200160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127200285 127200399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127203172 127203278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127203374 127203481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127203741 127203840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127207450 127208363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGAGACGGGTCCGGCGCCCCTTGTGGCCCCGCCGCGCCGCCACGGCGCCCCCGCTGCCCCTTCGCCCC
CGCCCCGGGGCTCCCGGGCCGGATCGCACTTAGTGGTGGAACCGGGACCGCCAGTGACTACAGCCACTTC
GGCCCCAGTCGAATTGGTGGCCCCCGGGGAGGCTCGGCCCGCCTGCGTCCCAGGATCATCACAGACCTCG
GCCTCTACACCCACGACAGCTACGAGCAGCACGGTAGTGATGCTGACCCTGGAGGCCTCACCCGAAGCCG
CGAAGACGCAAGAGTTCCCCGCACCAGCGGCAGAAACAGGAGCCGAGACGTCGGTGGCTTTGGCTTTGGG
GACAGACACTCAAAAGACGGAAGAGGTTCGAGCCTCTCCTGTCCCAGGACCAGGGACCCCCACTCGGACA
CCTTCCAGAATGGCGCCTGGAGCCCTGACTGCCAAACCCCCGCTTGCCCCCAAGCCGGGGACCACAGTGG
CTTCAGGAGTGACTGCACGGGGTGGAGTAGGACAGGTGGCAGGTGGGCATGAAGCTGCGACCTCAGCATC
AGCAGGGTCGGTGCCTGAGGACCCCTCAGGGCCTGTCACAGGCCCTCCCGGGACATGCGAGGCTCCGGCT
CCGACTCCGGTGGCTGTGGTGACAGTGACCCCAGCTCCGGAGCCTGTTGAAAACTTTCAAGACCTGGGCT
CCACGTCCAGTCTAGGACCTGGCATCTCGGGGCCTCGGGGTCAGGCCCCAGACACCCTGAGCTACTTGGA
CTCCGTGAGCCTCATGTCAGGGACCTTGGAGTCCTTGCCGGATGATGTGAGCTCCATGGGTTCAGACTCG
GAGATAAATGGGATGGCCCTGCGCAAGACGGACAAGTATGGTTTCCTTGGGGGCAGCCAGTACTCAGGCA
GCCTAGAGAGCTCTATTCCGGTGGATGTGGCTCGCCAGCGGGAGCTCAAGTGGCTGGAGATGTTCAGTAA
CTGGGATAAGTGGCTGTCACGGCGTTTCCAGAAGGTAAAGCTGCGCTGCCGGAAAGGAATCCCCTCCTCT
CTGAGAGCCAAGGCCTGGCAGTACCTGTCTAATAGCAAGGAACTCCTGGAGCAGAACCCTGGCAAGTTTG
AGGAGCTGGAGCGGGCTGCTGGGGACCCCAAGTGGCTCGATGTGATTGAGAAGGACCTGCATCGCCAGTT
CCCTTTCCATGAGATGTTTGCTGCTCGAGGAGGGCATGGGCAACAGGACCTGTACCGAATCCTGAAGGCC
TATACCATCTACAGGCCTGACGAGGGCTACTGTCAGGCCCAGGCCCCAGTGGCTGCGGTGTTGCTAATGC
ACATGCCTGCTGAGCAAGCGTTTTGGTGCCTGGTACAGATCTGCGACAAGTACCTCCCAGGTTACTACAG
TGCAGGGCTGGAAGCCATTCAGTTGGATGGAGAAATCTTTTTTGCACTCCTGCGCCGGGTCTCTCCGCTG
GCACATCGTCACCTTCGGCGGCAGCGCATTGACCCTGTGCTCTACATGACAGAGTGGTTCATGTGCATCT
TTGCCCGCACCCTCCCCTGGGCTTCAGTGCTGCGTGTCTGGGACATGTTTTTCTGTGAAGGCGTTAAGAT
CATCTTCCGAGTGGCTCTGGTTTTACTGCGGCACACACTGGGTTCTGTGGAAAAGCTGCGCTCATGTCAA
GGCATGTATGAAACCATGGAGCAGCTTCGAAACCTACCACAACAGTGTATGCAGGAGGACTTCCTGGTGC
ATGAGGTAACCAACCTCCCAGTGACAGAAGCATGGATTGAGCGGGAGAATGCAGCCCAACTGAAGAAGTG
GCGAGAAACTAGAGGAGAGCTGCAGTATCGGCCCTCACGGCGACTACACGGCTCCCGAGCCATCCATGAG
GAACGCAGGCGGCAGCAGCCACCCCTGGGCCCTTCCTCTAGCCTCCTCAGCCTCCCTAGTCTCAAGAGCA
GAGGCTCCCGGGCAGTTGGAGGGGCTCCTTCCCCACCACCTCCTGTCCGCAGGGCTAGTGCTGGGCCCGT
CCCTGGGGCTGTCGTCATTGCTGAGGGACTGCATCCATCCCTTCCTTCACCTACTGGTAACAGCACCCCA
CTAGGCACCAGCAAGGAGATCAGGCGGCAGGAGAAAGAGCGGCAGAAACAGGAGAAAGATCGAGAGAAGG
AGCGGCAGAGACAAGAGAAGGAGCGGGAAAGGCAGGAGAAGGAGCGGCAGAAGTGGGAAAAGGAGCAAGA
GAAGGAACAGCAGAAGCAGGAGAAGGAGCGGCAGAAGCTGGAGAAGAAAGGCCAAGGCCGGAAACTGTCC
TTGCGTCGAAGGGCAGATGGGCCCCCGGCATCCCATGATGGTGGGGACAGGTCAGCAGCTGAGGCCCGGC
AGGATGCTTACTTTTGA

Translation (798 aa):
METGPAPLVAPPRRHGAPAAPSPPPRGSRAGSHLVVEPGPPVTTATSAPVELVAPGEARPACVPGSSQTS
ASTPTTATSSTVVMLTLEASPEAAKTQEFPAPAAETGAETSVALALGTDTQKTEEVRASPVPGPGTPTRT
PSRMAPGALTAKPPLAPKPGTTVASGVTARGGVGQVAGGHEAATSASAGSVPEDPSGPVTGPPGTCEAPA
PTPVAVVTVTPAPEPVENFQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLPDDVSSMGSDS
EINGMALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSNWDKWLSRRFQKVKLRCRKGIPSS
LRAKAWQYLSNSKELLEQNPGKFEELERAAGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKA
YTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFALLRRVSPL
AHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQ
GMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEAWIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHE
ERRRQQPPLGPSSSLLSLPSLKSRGSRAVGGAPSPPPPVRRASAGPVPGAVVIAEGLHPSLPSPTGNSTP
LGTSKEIRRQEKERQKQEKDREKERQRQEKERERQEKERQKWEKEQEKEQQKQEKERQKLEKKGQGRKLS
LRRRADGPPASHDGGDRSAAEARQDAYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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