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Report for CCDS25112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25112.1 Public Mus musculus 11 Tmem97 23 108 98 CCDS HistoryNCBI Gene:69071Re-query CCDS DB by CCDS ID:25112.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103242.4 ENSMUSP00000099532.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103242.4Link to Ensembl Protein Viewer:ENSMUSP00000099532.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103242Re-query CCDS DB by Protein ID:ENSMUSP00000099532
Original member Current member NCBI NM_133706.2 NP_598467.1 Accepted alive Link to Nucleotide Sequence:NM_133706.2Link to Protein Sequence:NP_598467.1Re-query CCDS DB by Nucleotide ID:NM_133706Re-query CCDS DB by Protein ID:NP_598467Link to BLAST:NP_598467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598467.1 176 Q8VD00 176 100% 0 0

Chromosomal Locations for CCDS 25112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78542537 78542796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78543486 78543630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78550528 78550653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGGGGCCCTGGCAGCTAGGCGCTGTGTCGAGTGGCTCTTGGGCCTCTACTTCGTCTCGCACATCCCCA
TCACGCTGTTCATCGACCTGCAGGCGGTGCTGCCGCCCGAACTATACCCGCAGGAGTTCAGCAACCTGTT
GCGGTGGTACTCAAAGGAGTTCAAAGACCCTCTGATGCAGGAGCCCCCAGTGTGGTTCAAGTCCTTCCTG
CTCTGTGAGCTTGTGTTCCAGCTGCCTTTCTTTCCCATTGCGGCATATGCCTTCTTCAAAGGAAGCTGCC
GGTGGATCCGAATCCCTGCAATCATCTATGCAGCTCACACCATAACGACTTTAATTCCAATCCTCTACAC
ACTCCTGTTTGAGGATTTCTCTAAAGCCGTTGCTTTCAAGGGACAAAGACCCGAGAGTTTCCGTGAACGA
CTGACCCTCGTAGGTGTCTACGCCCCCTATTTAATAATCCCCCTCATACTCCTCCTGTTCATGCTTCGGA
ACCCGTACTACAAGTATGAGGAGAAAAGAAAGAAAAAATAG

Translation (176 aa):
MGALAARRCVEWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQEPPVWFKSFL
LCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLLFEDFSKAVAFKGQRPESFRER
LTLVGVYAPYLIIPLILLLFMLRNPYYKYEEKRKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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