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Report for CCDS18961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18961.1 Public Mus musculus 4 Lzic 23 108 98 CCDS HistoryNCBI Gene:69151Re-query CCDS DB by CCDS ID:18961.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030842.7 ENSMUSP00000030842.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030842.7Link to Ensembl Protein Viewer:ENSMUSP00000030842.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030842Re-query CCDS DB by Protein ID:ENSMUSP00000030842
Original member Current member NCBI NM_001356322.1 NP_001343251.1 Accepted alive Link to Nucleotide Sequence:NM_001356322.1Link to Protein Sequence:NP_001343251.1Re-query CCDS DB by Nucleotide ID:NM_001356322Re-query CCDS DB by Protein ID:NP_001343251Link to BLAST:NP_001343251.1
Original member Current member NCBI NM_026963.6 NP_081239.1 Accepted alive Link to Nucleotide Sequence:NM_026963.6Link to Protein Sequence:NP_081239.1Re-query CCDS DB by Nucleotide ID:NM_026963Re-query CCDS DB by Protein ID:NP_081239Link to BLAST:NP_081239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343251.1 190 Q8K3C3 190 100% 0 0
NP_081239.1 190 Q8K3C3 190 100% 0 0

Chromosomal Locations for CCDS 18961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149486760 149486860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149488056 149488191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149488630 149488728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149493199 149493294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149493732 149493813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149496080 149496138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCTTCCAGAGGAAAGACAGAGACAAGCAAACTAAAGCAGAATTTAGAAGAGCAGTTGGATAGACTGA
TGCAGCAGTTACAAGACCTGGAGGAATGCAGGGAGGAGCTCGATGCGGATGAATATGAAGAAACTAAAAA
GGAAACTTTGGAGCAGCTGAGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAATATGACTTTG
GTAGATGAACTCAGTGGGATGCAACTGGCCATCCAGGCAGCCATCAGCCAGGCCTTTAAAACTCCTGAAG
TCATCAGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCT
GATGGTGGGGAAGCTGGAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAA
CTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGT
TTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGGTCCTTGCTCTGGCAGGGTTCGATGTTGAAAA
AGCCAAGAAATGA

Translation (190 aa):
MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDADEYEETKKETLEQLSEFNDSLKKIMSGNMTL
VDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVGKLERELYTQRKVEILTALRK
LGEKLTEDDETFLSANASAVLSQFEKVSTELGSGDKVLALAGFDVEKAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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