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Report for CCDS25311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25311.1 Public Mus musculus 11 Lrrc46 23 108 98 CCDS HistoryNCBI Gene:69297Re-query CCDS DB by CCDS ID:25311.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021251.6 ENSMUSP00000021251.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021251.6Link to Ensembl Protein Viewer:ENSMUSP00000021251.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021251Re-query CCDS DB by Protein ID:ENSMUSP00000021251
Original member Current member NCBI NM_027026.2 NP_081302.2 Accepted alive Link to Nucleotide Sequence:NM_027026.2Link to Protein Sequence:NP_081302.2Re-query CCDS DB by Nucleotide ID:NM_027026Re-query CCDS DB by Protein ID:NP_081302Link to BLAST:NP_081302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081302.2 323 Q9DAP0 323 100% 0 0

Chromosomal Locations for CCDS 25311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97034663 97035024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97035459 97035604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97035872 97035941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97036096 97036205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97036470 97036516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97038772 97038880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97040867 97040972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97041083 97041104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCCAGGAGACGAGCAGGAAGCTAAGAAAGCTGCCCAGAGAACCGAGGAAGGTGTCCACATTACTGAAG
CCCTTATCACCAAGCGGAACCTGACCTTCCCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCACACTCT
CGGTGAACTGGAGACTGTCCGCCTGGACGGGGAAGGGATTACTTGTATCGGGAATTTAGAGAAACTCCGG
AATATTCACAGCCTCTACCTGCAATCGAATAAGATCCAGCGCATTGAGAACTTGGCATGCATCACCTCCC
TGCGCTTCCTGTCTTTGGCAAGAAACCAAATCAGGCATGTGGAAAACCTCCTTGACCTCCAGTACCTCCA
GTTTCTGGACCTGTCTGAGAACCTGATAGAAACGCTGAAGCTAGATGAGCTCCCTGAGAGCCTTCTCATC
CTCAACCTGTGTGGAAATCCCTGCACCAACCAGGAAGGCTACAGGAAGATGGTGATAGGAGCCCTGCCAC
TGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACCTCAGATGAGGAGGATAAATCCTCAGA
TGATGATGATGAGTTTCCAGAGCTCAATGGCCCCTTCTGCGCAGAGCGAGGATTCTTCAAGGACTTGGAG
CAGGAACTGCATCAGCATCAGGAACGCAGGCAGCAGGCAGCACTGACAGAGCACTTGTCAAGGATGGAGA
CACAGCCTGTCCTCACAGACCTGCCCCTGCTGCCTGCTGTGCCCATGGCTGGGGACTGCAGCTCTACTGC
CACTGACCAGCCTGGGAAGGAGTCAGCCCCTAAAGCTACCTCCTCAACTCAGACTGCCTCTACTACCAAG
AAACAGGTTTCCAAGAACCAGAAAAGTTCTGTCCAGGCAAGGAAGGGGGCTCTAGCAGCCACAACCTCCA
AGACCTCTCAGGCTGCAACCCCCAGCATGACAAAAATGACAAACAAGAAAAGCACAAAGTAG

Translation (323 aa):
MPGDEQEAKKAAQRTEEGVHITEALITKRNLTFPGDEDLSEKMFHTLGELETVRLDGEGITCIGNLEKLR
NIHSLYLQSNKIQRIENLACITSLRFLSLARNQIRHVENLLDLQYLQFLDLSENLIETLKLDELPESLLI
LNLCGNPCTNQEGYRKMVIGALPLLLDLDKQPILERWTSDEEDKSSDDDDEFPELNGPFCAERGFFKDLE
QELHQHQERRQQAALTEHLSRMETQPVLTDLPLLPAVPMAGDCSSTATDQPGKESAPKATSSTQTASTTK
KQVSKNQKSSVQARKGALAATTSKTSQAATPSMTKMTNKKSTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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