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Report for CCDS17982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17982.1 Public Mus musculus 4 Necab1 23 108 98 CCDS HistoryNCBI Gene:69352Re-query CCDS DB by CCDS ID:17982.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17982.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041606.13 ENSMUSP00000038165.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041606.13Link to Ensembl Protein Viewer:ENSMUSP00000038165.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041606Re-query CCDS DB by Protein ID:ENSMUSP00000038165
Original member Current member EBI ENSMUST00000108273.1 ENSMUSP00000103908.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108273.1Link to Ensembl Protein Viewer:ENSMUSP00000103908.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108273Re-query CCDS DB by Protein ID:ENSMUSP00000103908
Original member Current member NCBI NM_178617.4 NP_848732.3 Accepted alive Link to Nucleotide Sequence:NM_178617.4Link to Protein Sequence:NP_848732.3Re-query CCDS DB by Nucleotide ID:NM_178617Re-query CCDS DB by Protein ID:NP_848732Link to BLAST:NP_848732.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848732.3 352 Q8BG18 352 100% 0 0

Chromosomal Locations for CCDS 17982.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 14955893 14955921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14957826 14957917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14960008 14960085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14965906 14966018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14975133 14975186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14978155 14978231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14989158 14989279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15004969 15005105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15052620 15052717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15065324 15065349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15111194 15111302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15140225 15140249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15148818 15148916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGAGGATTCCCGGGAGACTTCGCCTTCCTCCAACAACTCCTCGGAAGAGCTCAGCTCTACCCTGCAAC
TGTCCAAGGGCATGTCCATCTTCCTCGACATTCTGAGGAGAGCAGACAAAAATGATGATGGAAAATTGTC
CTTTGAGGAATTTAAAGCATATTTTGCAGATGGAGTTCTCAGTGGAGAAGAACTACATGAGCTCTTCCAC
ACCATTGACACACACAATACCAACAATCTCGACACAGAAGAACTATGCGAATATTTTTCTCAGCACTTGG
GTGAATATGAGAATGTACTGGCCGCACTTGAAGACCTGAATCTCTCCATCCTGAAGGCAATGGGCAAGAC
AAAGAAAGACTACCAAGAAGCTTCCAATTTGGAACAATTTGTCACTCGATTTTTGTTGAAGGAGACCTTG
AATCAGTTGCAGTCTCTCCAGAACTCTCTGGAATGTGCCATGGAAACTACTGAAGAGCAAACGCGTCAAG
AAAGGCAAGGACCATCCAAGCCAGAAGTCCTGTCCATTCAATGGCCTGGAAAGCGATCCAGCCGCCGAGT
CCAGAGACACAATAGTTTCTCCCCCAACAGCCCGCAGTTCAATGTCAGCAGTCCAGCATTGTTAGAAGAA
GACAACCAGTGGATGACCCAGATAAACAGACTCCAGAAATTAATTGATAGACTGGAAAAGAAGGATCTGA
AACTTGAACCCCTGGAAGAAGAAATTATTGAAGAGAACACTAAACCTCACATCATGCTTGTGCAGCGCCA
GATGTCTGTGACAGAAGAGGATCTGGAAGAATTCCAGCTTGCTCTGAAGCACTATGTGGAGAGTGCTTCA
GCTCAAAGTGGATGCCTGCGTATCTCTATACAGAAGCTCTCAAACGAATCTCGCTACATGATTTATGAGT
TCTGGGAGAACAGCAGTGTGTGGAACCGCCACCTCCAGACGAATTACAGCAAGACGTTCCAAAGAAGCAA
CGTGGATTTCTTGGAAACTCCAGAGCTCACATCTACCATGCTAGTTCCTGCTTCATGGTGGATCCTGAAC
AACAATTAG

Translation (352 aa):
MEDSRETSPSSNNSSEELSSTLQLSKGMSIFLDILRRADKNDDGKLSFEEFKAYFADGVLSGEELHELFH
TIDTHNTNNLDTEELCEYFSQHLGEYENVLAALEDLNLSILKAMGKTKKDYQEASNLEQFVTRFLLKETL
NQLQSLQNSLECAMETTEEQTRQERQGPSKPEVLSIQWPGKRSSRRVQRHNSFSPNSPQFNVSSPALLEE
DNQWMTQINRLQKLIDRLEKKDLKLEPLEEEIIEENTKPHIMLVQRQMSVTEEDLEEFQLALKHYVESAS
AQSGCLRISIQKLSNESRYMIYEFWENSSVWNRHLQTNYSKTFQRSNVDFLETPELTSTMLVPASWWILN
NN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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