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Report for CCDS20318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20318.1 Public Mus musculus 6 Antxr1 23 108 98 CCDS HistoryNCBI Gene:69538Re-query CCDS DB by CCDS ID:20318.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042025.11 ENSMUSP00000045634.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042025.11Link to Ensembl Protein Viewer:ENSMUSP00000045634.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042025Re-query CCDS DB by Protein ID:ENSMUSP00000045634
Original member Current member NCBI NM_054041.2 NP_473382.1 Accepted alive Link to Nucleotide Sequence:NM_054041.2Link to Protein Sequence:NP_473382.1Re-query CCDS DB by Nucleotide ID:NM_054041Re-query CCDS DB by Protein ID:NP_473382Link to BLAST:NP_473382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473382.1 562 Q9CZ52-1 562 100% 0 0

Chromosomal Locations for CCDS 20318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87137095 87137355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87180110 87180190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87188107 87188274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87188736 87188831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87204409 87204450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87217274 87217369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87240950 87241028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87242487 87242556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87255783 87255881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87269243 87269303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87282687 87282767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87284254 87284322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87287001 87287080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87288152 87288185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87288758 87288839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87308328 87308399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87312323 87312394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87335297 87335442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGACCGCGCGGGGCGCCTGGGTGCGGGCCTGCGGGGACTCTGCGTGGCTGCACTCGTGCTCGTGTGCG
CCGGACACGGGGGCCGCCGCGAGGATGGGGGACCAGCTTGCTACGGAGGATTCGACCTCTACTTCATCCT
GGACAAGTCAGGAAGTGTGCTGCACCACTGGAATGAAATCTACTACTTCGTGGAGCAGTTGGCTCATAGA
TTCATCAGCCCACAGCTAAGGATGTCCTTCATTGTCTTCTCTACTCGAGGGACAACTTTAATGAAACTAA
CTGAGGACAGGGAACAGATCCGACAAGGCCTAGAAGAGCTCCAGAAAGTTCTGCCAGGAGGAGACACTTA
CATGCACGAAGGATTCGAGAGGGCCAGTGAGCAGATTTACTATGAGAACAGTCAAGGATACAGGACGGCG
AGCGTCATCATCGCGTTGACGGATGGGGAGCTGCACGAGGACCTCTTCTTCTACTCAGAGAGGGAGGCTA
ACCGATCCCGAGACCTTGGTGCGATTGTTTACTGCGTTGGCGTGAAGGATTTCAATGAAACTCAGTTGGC
TCGGATTGCAGACAGTAAGGACCACGTGTTTCCTGTGAACGACGGCTTCCAGGCTCTCCAAGGCATTATC
CACTCAATTTTAAAGAAATCCTGCATCGAAATTCTGGCGGCTGAACCATCCACCATCTGCGCGGGAGAGT
CCTTTCAAGTGGTCGTAAGAGGAAATGGCTTCCGACATGCCCGCAATGTGGACAGGGTCCTCTGCAGCTT
CAAAATCAATGACTCAGTCACGCTCAATGAGAAGCCCTTTGCTGTGGAAGACACTTATTTGCTGTGCCCA
GCACCAATCTTGAAAGAAGTTGGCATGAAAGCTGCACTGCAGGTCAGCATGAACGACGGCCTGTCCTTCA
TCTCCAGTTCTGTCATCATCACCACCACACACTGTTCAGACGGCTCCATCCTGGCGATTGCTCTGCTGGT
CCTCTTCCTGCTGCTGGCCCTGGCGCTGCTCTGGTGGTTCTGGCCCCTCTGCTGCACAGTGATCATCAAG
GAGGTCCCTCCACCCCCTGTTGAGGAGAGTGAGGAAGAAGACGATGATGGTTTGCCAAAGAAGAAATGGC
CCACAGTAGATGCCTCTTATTATGGTGGACGCGGTGTGGGAGGCATTAAAAGAATGGAGGTCCGCTGGGG
AGAAAAGGGCTCCACAGAAGAAGGGGCGAAGTTAGAAAAGGCAAAGAATGCACGAGTCAAGATGCCAGAG
CAAGAATATGAGTTCCCAGAACCCCGAAACCTCAACAACAACATGCGCCGGCCTTCCTCGCCTCGGAAGT
GGTACTCGCCCATCAAGGGAAAACTCGATGCCTTGTGGGTTCTGCTGAGAAAAGGATATGACCGAGTGTC
TGTGATGAGGCCACAGCCAGGAGACACGGGACGCTGTATCAACTTCACCAGAGTGAAGAACAGTCAGCCA
GCCAAGTATCCCCTGAACAACACCTACCACCCCAGCTCCCCACCTCCCGCTCCTATCTACACACCCCCAC
CCCCTGCTCCCCACTGCCCTCCCCCAGCCCCCAGTGCCCCCACTCCTCCCATTCCTTCCCCACCATCCAC
TCTCCCCCCTCCTCCTCAGGCCCCACCCCCTAACAGGGCACCTCCCCCCTCCCGACCTCCTCCAAGGCCT
TCTGTCTAG

Translation (562 aa):
MDRAGRLGAGLRGLCVAALVLVCAGHGGRREDGGPACYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHR
FISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENSQGYRTA
SVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGII
HSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFKINDSVTLNEKPFAVEDTYLLCP
APILKEVGMKAALQVSMNDGLSFISSSVIITTTHCSDGSILAIALLVLFLLLALALLWWFWPLCCTVIIK
EVPPPPVEESEEEDDDGLPKKKWPTVDASYYGGRGVGGIKRMEVRWGEKGSTEEGAKLEKAKNARVKMPE
QEYEFPEPRNLNNNMRRPSSPRKWYSPIKGKLDALWVLLRKGYDRVSVMRPQPGDTGRCINFTRVKNSQP
AKYPLNNTYHPSSPPPAPIYTPPPPAPHCPPPAPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP
SV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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