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Report for CCDS24513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24513.1 Public Mus musculus 11 Bod1 23 108 98 CCDS HistoryNCBI Gene:69556Re-query CCDS DB by CCDS ID:24513.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058060.13 ENSMUSP00000056417.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058060.13Link to Ensembl Protein Viewer:ENSMUSP00000056417.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058060Re-query CCDS DB by Protein ID:ENSMUSP00000056417
Original member Current member EBI ENSMUST00000109415.1 ENSMUSP00000105042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109415.1Link to Ensembl Protein Viewer:ENSMUSP00000105042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109415Re-query CCDS DB by Protein ID:ENSMUSP00000105042
Original member Current member NCBI NM_001024919.1 NP_001020090.1 Accepted alive Link to Nucleotide Sequence:NM_001024919.1Link to Protein Sequence:NP_001020090.1Re-query CCDS DB by Nucleotide ID:NM_001024919Re-query CCDS DB by Protein ID:NP_001020090Link to BLAST:NP_001020090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020090.1 173 Q5SQY2 173 100% 0 0

Chromosomal Locations for CCDS 24513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31666738 31666933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31669244 31669368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31671501 31671701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCGGACGGTGCGGGAGCAGGCGCGGCGGGCCAGGCTTCGGGACCGTCCGGGGGCTCGAGTGGGGCCG
GCGGCCCTGTCAATCCCGCTTCGCTGCCTCCGGGAGACCCGCAGCTCATCGCTCTCATAGTGGAGCAGCT
CAAGAGCCGTGGGCTGTTTGACAGCTTCCGCCGGGACTGCCTGGCCGACGTGGACACTAAGCCAGCTTAC
CAGAACCTAAGGCAGAAGGTGGATAATTTCGTGTCAACACATCTGGACAAACAGGAATGGAATCCTGCAA
TGAACAAGAACCAGTTGCGAAATGGGCTGAGGCAGAGCGTGGTTCAGTCAGGTATGTTGGAAGCAGGAGT
GGACAGGATCATTTCCCAAGTGGTAGACCCCAAACTAAACCACATCTTCAGGCCACAGATAGAGAGAGCA
ATCCATGAGTTCCTGGCTGCCCAGAAAAAAGAAGCTGTGCCGGCCCCGCCTCCAGAACCTGAAAGCCAGG
ACCCTCCAGCACCATCCCAGGATGCTTCCTAA

Translation (173 aa):
MADGAGAGAAGQASGPSGGSSGAGGPVNPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAY
QNLRQKVDNFVSTHLDKQEWNPAMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERA
IHEFLAAQKKEAVPAPPPEPESQDPPAPSQDAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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