NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36462.1 Public Mus musculus 12 Lrr1 23 108 98 CCDS HistoryNCBI Gene:69706Re-query CCDS DB by CCDS ID:36462.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110621.2 ENSMUSP00000106251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110621.2Link to Ensembl Protein Viewer:ENSMUSP00000106251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110621Re-query CCDS DB by Protein ID:ENSMUSP00000106251
Original member Current member NCBI NM_001081406.2 NP_001074875.1 Accepted alive Link to Nucleotide Sequence:NM_001081406.2Link to Protein Sequence:NP_001074875.1Re-query CCDS DB by Nucleotide ID:NM_001081406Re-query CCDS DB by Protein ID:NP_001074875Link to BLAST:NP_001074875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074875.1 422 D3YY91 422 100% 0 0

Chromosomal Locations for CCDS 36462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69168856 69169062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69171862 69171960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69174392 69175113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69178580 69178820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGAGGCTGCCCTGCGAGGTGGAGGTCCGTAGCTGTCATTTGCCAACCTTAGGGCTCAAGAGCCGAGGCA
AGGGCGTGCGAGCGGTGGTGAGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGC
AGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTA
AGAGAGAACATTGAGCAGCTCTTCACCAAATTTGTGGATGAGGGGAAAGCCACTGTCCGGCTAAAGGAGC
CTCCTGTGGACATCTGTCTGAGTAAGGCCAATCCTGGCAATTTAAAGACTTTACTTTCAGCTATGAGACT
GGCTCATAGAGGCTGTGACGTCAACACACCACTCTCAACACTAAAACCAGTGAAGACTTCAGAATTTGAA
AAATATAAAACCAAAATGGTTATCACATCCAAAAAGGATTATCCTCTAAGCAAGAACTTTCCATATTTTC
TGGAACACCTTCAGGCTTCTTACTGTAGCCTTGCCCGAGTTGATATGCGTATGCTGTGCTTAAAAAATCT
TACGAAGTTAGACCTGAGTCACAACTGTATAAAAAAACTTCCAGCTACAATTGGAGACCTCACCCACCTT
CAAGAGCTTAACCTTAATGACAATCAGCTGGAGACCTTTAGTGTGCCCTTGTGTACTTCCACACTCCAGA
AGTCACTTCACAGTTTGGATCTCAGCAAGAACAAAATCAAAGCGCTCCCTGTGCAGTTTTGTCAATTCCG
GGAACTTACTAACTTAAACCTTAATGATAATGAATTGATTCACCTTCCTTTCAAGATAGGACAGCTAACA
AACCTCCGTTTTCTATCAGCAGCTCGAAACAAACTTAGAAATCTACCCTCTGAATTTAAAATGTTATCCC
TGGAGTACTTGGATCTTTTTGGGAATACTTTTGAAAAACCAGAAGTCATTCCAATTATAAAGCTTCAAGT
ACCATTAACTTTACTGGAATCATGTGAACAAGCTGTGCTATTCTATAGGATTCCATATGGCCCTGATATA
ATTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGTGGAAGATTTTGTCTCCAAT
CTTTCATTCAAGGAACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTAT
GGGAAGAACGGAAGCTCCTGTTGTCTCTTACTTTTGTTCTCTAACCTGTTTTGTAAAGTCCTCTGATATG
TTGAACTAA

Translation (422 aa):
MRLPCEVEVRSCHLPTLGLKSRGKGVRAVVSLCQAPGRNELQPEARAEPGGHACLLVSTMKDRQGTSYKL
RENIEQLFTKFVDEGKATVRLKEPPVDICLSKANPGNLKTLLSAMRLAHRGCDVNTPLSTLKPVKTSEFE
KYKTKMVITSKKDYPLSKNFPYFLEHLQASYCSLARVDMRMLCLKNLTKLDLSHNCIKKLPATIGDLTHL
QELNLNDNQLETFSVPLCTSTLQKSLHSLDLSKNKIKALPVQFCQFRELTNLNLNDNELIHLPFKIGQLT
NLRFLSAARNKLRNLPSEFKMLSLEYLDLFGNTFEKPEVIPIIKLQVPLTLLESCEQAVLFYRIPYGPDI
IPYHLCQDLDTAKTCVCGRFCLQSFIQGTTTMNLHSVAHTVVLVDSMGRTEAPVVSYFCSLTCFVKSSDM
LN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH