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Report for CCDS23597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23597.1 Public Mus musculus 9 Cmtm8 23 108 98 CCDS HistoryNCBI Gene:70031Re-query CCDS DB by CCDS ID:23597.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047013.3 ENSMUSP00000043706.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047013.3Link to Ensembl Protein Viewer:ENSMUSP00000043706.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047013Re-query CCDS DB by Protein ID:ENSMUSP00000043706
Original member Current member NCBI NM_027294.2 NP_081570.1 Accepted alive Link to Nucleotide Sequence:NM_027294.2Link to Protein Sequence:NP_081570.1Re-query CCDS DB by Nucleotide ID:NM_027294Re-query CCDS DB by Protein ID:NP_081570Link to BLAST:NP_081570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081570.1 173 Q9CZR4 173 100% 0 0

Chromosomal Locations for CCDS 23597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114789662 114789745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114790638 114790754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114796041 114796214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114843781 114843927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGAAGAGCAGCAGCGCGCGCGCTCGCACACGGTCACCACCACTACCAGCTCCTTTGCGGAGAACTTCT
CCACCACCAGCAGCAGCTTCGCTTACGACCGAGAGTTCCTCCGTACCCCGCCGGGGCTCCTGATCGTAGC
CGAGATCGTCTTGGGACTGCTGGTGTGGACTCTCATCGCTGGCACTGAGTATTTTAGAGTCCCTGCTTTT
GGCTGGGTAATGTTTGTGGCTGTCTTCTACTGGGTCCTCACCGTCTTCTTCCTCATTGTCTACATCACCC
TGACTTACACCAGGATTCCCCAGGTGCCCTGGACCACAGTGGGCCTGTGCTTTAATGGCAGTGCCTTCGT
CTTGTACTTCTCAGCTGCCATAGTGGACGCATCTTCTGTCTCCCCAGAGAAGGAAGGGCACAACTTCAAC
AGCTGGGCAGCCTCCTCGTTCTTTGCCTTCCTGGTCACCATCTGCTATGCTGGAAACACGTACTTCAGTT
TCATAGCCTGGAGATCGAGGACGGCACAGTGA

Translation (173 aa):
MEEQQRARSHTVTTTTSSFAENFSTTSSSFAYDREFLRTPPGLLIVAEIVLGLLVWTLIAGTEYFRVPAF
GWVMFVAVFYWVLTVFFLIVYITLTYTRIPQVPWTTVGLCFNGSAFVLYFSAAIVDASSVSPEKEGHNFN
SWAASSFFAFLVTICYAGNTYFSFIAWRSRTAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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