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Report for CCDS79245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79245.1 Public Mus musculus 13 Zfp131 23 108 98 CCDS HistoryNCBI Gene:72465Re-query CCDS DB by CCDS ID:79245.1Re-query CCDS DB by GeneID:72465See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177916.7 ENSMUSP00000136867.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177916.7Link to Ensembl Protein Viewer:ENSMUSP00000136867.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177916Re-query CCDS DB by Protein ID:ENSMUSP00000136867
Original member Current member EBI ENSMUST00000223722.1 ENSMUSP00000153044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223722.1Link to Ensembl Protein Viewer:ENSMUSP00000153044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223722Re-query CCDS DB by Protein ID:ENSMUSP00000153044
Original member Current member NCBI NM_001302547.1 NP_001289476.1 Accepted alive Link to Nucleotide Sequence:NM_001302547.1Link to Protein Sequence:NP_001289476.1Re-query CCDS DB by Nucleotide ID:NM_001302547Re-query CCDS DB by Protein ID:NP_001289476Link to BLAST:NP_001289476.1
Original member Current member NCBI NM_001302549.1 NP_001289478.1 Accepted alive Link to Nucleotide Sequence:NM_001302549.1Link to Protein Sequence:NP_001289478.1Re-query CCDS DB by Nucleotide ID:NM_001302549Re-query CCDS DB by Protein ID:NP_001289478Link to BLAST:NP_001289478.1
Original member Current member NCBI NM_001302550.1 NP_001289479.1 Accepted alive Link to Nucleotide Sequence:NM_001302550.1Link to Protein Sequence:NP_001289479.1Re-query CCDS DB by Nucleotide ID:NM_001302550Re-query CCDS DB by Protein ID:NP_001289479Link to BLAST:NP_001289479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289476.1 619 Q8K3J5-1 619 100% 0 0
NP_001289478.1 619 Q8K3J5-1 619 100% 0 0
NP_001289479.1 619 Q8K3J5-1 619 100% 0 0

Chromosomal Locations for CCDS 79245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119766352 119767026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119768706 119768836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119775767 119776449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119782772 119782916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119788860 119788961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119790149 119790272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTTCCTGAACATCATAAAATGATCTTGGACCGAT
TGAATGAACAACGGGAGCAGGACCGGTTTACGGACATCACCCTGATTGTCGACGGACACCATTTTAAGGC
CCACAAGGCTGTTTTGGCTGCCTGCAGTAAGTTCTTCTACAAATTCTTCCAGGAGTTTACTCAAGAGCCT
TTGGTTGAAATTGAAGGTGTTAGTAAAATGGCTTTTCGCCACTTAATTGAGTTCACATACACAGCAAAAC
TAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGC
TATTAAAGCACTTGAAGTCAGGAACAAAGAAAACTCAGCTCCATTAGAGGAAAACACTACAGGAAAAAAT
GAGGCAAAAAAAAGAAAGATTGCAGAAACTTCAAATGTTATCACTGAATCATTACCATCTGCAGAATCAG
AACCTGTGGAAATTGAGGTGGAGATTGCTGAGGGCACAATTGAAGTAGAAGATGAAGGCATCGAAGCTTT
GGAGGAAATGGCTTCTGCCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGATTCCGCT
CTGGCGTTGTTGGCAGATATCACCAGCAAGTACCGTCAAGGTGAAAGCAAAGGACAGATTAGCGAAGATG
ACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGT
GAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATG
AAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGAGAGAGTGCGTGGA
AACAGCACCTTAACTGTTACCACCTTGAAGAAGGTGGAGTAAGTAAGAAGCAAAGAACTGGGAAAAAAAT
TCACATATGCCAGTACTGTGACAAACAGTTTGACCACTTTGGACACTTTAAAGAACACCTTCGAAAACAT
ACAGGTGAAAAACCTTTTGAATGTTCAAATTGTCACGAGCGGTTTGCTAGAAATAGCACTCTCAAATGTC
ACCTCACTGCATGCCAAACTGGAGTAGGAGCAAAAAAGGGCAGGAAGAAGCTTTATGAATGCCAGGTCTG
TAACAGTGTATTTAACAGCTGGGACCAGTTCAAAGATCACTTGGTAATACACACTGGAGATAAACCCAAC
CATTGTACTCTGTGTGACTTGTGGTTTATGCAAGGAAATGAATTACGGAGGCATCTTAGTGATGCTCACA
ATATTTCAGAGCGTATAGTAACTGAAGAAGTCCTTTCAGTAGAAACACATTTACAAACCGAGCCAGTGAC
ATCAATGACTATTATAGAGCAAGTTGGGAAAGTGCATGTGTTGCCACTGCTTCAGGTCCAAGTGGATTCC
GCACAAGTAACTGTGGAACAAGTTCATCCAGATCTGCTCCAGGACAGCCAAGTGCATGATTCACAAATGA
CCGGGCTTCCAGAGCAGGTCCAAGTGAGTTATCTGGAAGTGGGCCGAATTCAGACTGAAGAAGGCACTGA
AGTACATGTTGAAGAGCTTCACGTTGAACGGGTAAATCAGATGCCAGTTGAAGTACAGACTGAGCTTCTA
GAAGCTGACTTGGATCACATGACCCCTGAAATCATGAGCCAAGAGGAGAGAGAGCCTAACCATGCAGATG
CTGCCATGGAAGAACACGAAGATGCTGAGGGGTTAGAGACCAAACCAAGCGAGTATTCCCAAGCTAGAAA
AACAGAGAATGACAGGACATCTCTGCCGGTTTTAGAATGA

Translation (619 aa):
MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEP
LVEIEGVSKMAFRHLIEFTYTAKLMIQGEEEANDVWKAAEFLQMLEAIKALEVRNKENSAPLEENTTGKN
EAKKRKIAETSNVITESLPSAESEPVEIEVEIAEGTIEVEDEGIEALEEMASAKQSIKYIQSTGSSDDSA
LALLADITSKYRQGESKGQISEDDCASDPISKQVEGIEIVELQLSHVKDLFHCEKCNRSFKLFYHFKEHM
KSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGKKIHICQYCDKQFDHFGHFKEHLRKH
TGEKPFECSNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFKDHLVIHTGDKPN
HCTLCDLWFMQGNELRRHLSDAHNISERIVTEEVLSVETHLQTEPVTSMTIIEQVGKVHVLPLLQVQVDS
AQVTVEQVHPDLLQDSQVHDSQMTGLPEQVQVSYLEVGRIQTEEGTEVHVEELHVERVNQMPVEVQTELL
EADLDHMTPEIMSQEEREPNHADAAMEEHEDAEGLETKPSEYSQARKTENDRTSLPVLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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