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Report for CCDS17401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17401.1 Public Mus musculus 3 Smc4 23 108 98 CCDS HistoryNCBI Gene:70099Re-query CCDS DB by CCDS ID:17401.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042901.14 ENSMUSP00000047872.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042901.14Link to Ensembl Protein Viewer:ENSMUSP00000047872.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042901Re-query CCDS DB by Protein ID:ENSMUSP00000047872
Original member Current member NCBI NM_133786.4 NP_598547.1 Accepted alive Link to Nucleotide Sequence:NM_133786.4Link to Protein Sequence:NP_598547.1Re-query CCDS DB by Nucleotide ID:NM_133786Re-query CCDS DB by Protein ID:NP_598547Link to BLAST:NP_598547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598547.1 1286 Q8CG47 1286 100% 0 0

Chromosomal Locations for CCDS 17401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69006081 69006213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69007189 69007367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69007929 69008120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69009484 69009660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69016093 69016257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69016652 69016779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69018071 69018211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69019175 69019325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69021236 69021400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69022226 69022459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69024165 69024350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69025824 69025985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69027493 69027718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69027819 69027898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69028445 69028597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69029401 69029527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69030243 69030432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69031408 69031552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69031737 69031910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69032707 69032889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69033026 69033258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69033938 69034121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69034374 69034526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3861 nt):
ATGCGGCGTAAGGGCACCAAGCCCTCCACTGCCTGCCACCAGGAGGAAGGGCCGCCGCCCTCCCAGGACG
GTGCCCACAGCGACGAAGAGATGGAGCAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAAAGCCTCC
AGGTGAGGAGCTGGATAACAGAAGTTTAGAGGAGATTTTGAATAGTATCCCTCCACCCCCACCTCCAGCC
ATGGCCAGTGAAGCTGGAGCTCCTCGTCTCATGATAACTCATATTGTAAACCAAAACTTCAAGTCCTATG
CTGGAGAGAAAGTTCTGGGACCTTTCCATAAGCGCTTTTCCTGTATTATTGGACCAAATGGCAGTGGAAA
ATCCAATGTTATTGATTCCATGCTTTTTGTGTTTGGCTATCGAGCACAAAAAATAAGGTCTAAAAAGCTA
TCGGTACTGATACATAATTCTGATGAACACAAGGATATTCAGAGTTGTACTGTAGAAGTTCATTTTCAAA
AGATAATTGATAAGGAAGGAGATGATTACGAAGTCCTTCCTAACAGCAACTTCTATGTATCCAGAACCGC
CTACAGAGATAGCACTTCTGTCTACCACATAAGTGGGAAGAAGAAGACGTTTAAAGATGTTGGAAATCTC
CTTAGAAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGAAGTTGAACAGATTG
CTATGATGAAACCCAAAGGCCAGACTGAACATGATGAAGGTATGCTTGAGTATTTAGAAGATATAATTGG
CTGTGGACGGCTAAATGAACCTATTAAAGTCTTGTGTCGGAGAGTTGAAATATTAAATGAACACAGAGGA
GAAAAGTTAAATAGAGTGAAAATGGTAGAAAAGGAGAAGGATGCACTAGAGGGAGAGAAAAACATAGCCA
TTGAGTTCCTTACCCTGGAAAATGAAATGTTTAAGAAAAAGAATCACATCTGTCAATACTACATTTATGA
TCTGCAGAATAGAATTGCTGAAATAACGACTCAAAAGGAAAAAATTCATGAAGATACTAAAGAAATTACT
GAGAAGAGCAATGTGCTTTCCAATGAAATGAAAGCGAAGAATTCAGCTGTAAAGGATGTAGAAAAGAAGC
TCAATAAAGTTACAAAATTTATCGAACAGAATAAAGAAAAATTTACACAACTAGATTTGGAAGATGTTCA
AGTTAGGGAAAAATTAAAACATGCTACAAGTAAAGCCAAGAAACTGGAGAAACAACTTCAAAAAGATAAA
GAAAAGGTTGAAGAGCTGAAAAGTGTACCTGCCAAGAGTAAGACTGTCATAAATGAGACAACAACTAGAA
ACAATTCGCTTGAGAAAGAAAGAGAGAAAGAAGAAAAAAAATTAAAAGAGGTCATGGACAGCCTTAAGCA
GGAAACACAGGGGCTTCAGAAAGAAAAGGAGATTCAAGAAAAGGAACTTATGGGTTTTAACAAATCAGTA
AATGAAGCACGTTCAAAGATGGAAGTTGCTCAGTCAGAACTTGATATCTATCTCAGTCGACATAATACAG
CAGTGTCTCAATTAAGTAAGGCGAAGGAAGCCTTAATTACAGCTTCTGAGACTCTCAAGGAGAGGAAAGC
TGCAATCAAGGATATAAACACAAAGCTCCCTCAGACGCAACAGGAACTAAAGGAGAAAGAAAAAGAACTT
CAGAAACTGACACAAGAAGAAATAAACTTAAAAAGTTTGGTTCATGATCTTTTCCAAAAAGTTGAAGAAG
CAAAGAGTTCCTTAGCAATGAATCGAAGTAGGGGGAAAGTACTTGATGCAATAATTCAAGAAAAAAAATC
AGGCAGGATCCCAGGAATATATGGAAGATTGGGAGACTTAGGAGCTATTGATGAAAAATATGACATTGCT
ATTTCATCCTGTTGCCATGCATTGGACTACATTGTTGTTGATTCTATTGATACAGCCCAAGAATGTGTAA
ACTTCCTTAAAAAGCATAATATTGGGATTGCAACTTTCATAGGTTTGGATAAGATGACAGTGTGGGCCAA
AAAAATGAGCAAAATTCAAACTCCTGAAAATACTCCTCGGTTATTTGATCTAGTTAAAGTGAAAAATGAG
GAAATCCGCCAAGCCTTTTACTTTGCTTTACGAGATACCTTGGTGGCTAACAATTTGGATCAAGCTACAA
GAGTAGCGTACCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACAGTCAGG
TACAATGAGTGGCGGTGGAAGCAAGGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCT
GTAGAAGAGGTAAATAAGATGGAATCCCAGTTGGAAAGGCATTCTAAACAAGCAATGCAAATCCAAGAAC
AGAAAGTACAACATGAAGAAGCAGTAGTTAAGTTACGGCACAGTGAACGAGACATGAGAAATACACTGGA
AAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACAAATTAAAGAACTG
GAAGCTAACGTTCTTACTACGGCCCCTGACAGAAAACAACAGAAACTGCTGGAAGAAAATGTCAGTGTTT
TCAAAAAAGAATATGATGCTGTGGCTGAGAAAGCTGGTAAAGTTGAAGCTGAGATTAAACGGCTACACAA
TACCATCATAGATATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAAGCAG
CTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAATCAAGACTGCTGACAGAAATCTTAAAA
AGGCACAGGATTCTGTTTGCCGCACAGAGAAAGAAATAAAAGACACTGAAAAAGAAATAAATGACTTAAA
GACAGAGCTAAAAAATATTGAAGACAAGGCAGAAGAGGTCATAAACAATACAAAAACTGCAGAGACATCC
TTACCAGAAATCCAGAAAGAACATCGTAATCTACTTCAGGAACTAAAAGTTATTCAAGAAAATGAACATG
CTCTTCAGAAAGATGCACTTAGTATTAAGTTGAAACTTGAACAGATAGATGGCCACATTTCTGAACATAA
CTCAAAAATAAAATACTGGCAAAAAGAGATTTCAAAAATAAAATTGCATCCTGTTGAAGATAATCCTGTT
GAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGGCAATCAAGAATCCAGAGTCTATAACAAATGAAA
TTGCACTTTTGGAAGCTCAGTGTCGTGAAATGAAACCAAACCTTGGAGCCATCGCTGAGTATAAAAAAAA
GGAAGATTTATATTTGCAAAGAGTAGCCGAACTGGACAAAATTACTTCTGAAAGAGATAATTTTAGACAA
GCATATGAAGATCTTCGAAAACAAAGGCTGAATGAATTTATGGCTGGTTTTTACGTAATAACAAATAAAC
TAAAAGAAAACTACCAGATGCTCACATTGGGAGGAGATGCTGAACTGGAGCTTGTGGACAGTTTAGATCC
TTTTTCTGAAGGAATCATGTTCAGTGTTCGGCCACCTAAGAAAAGTTGGAAGAAGATCTTTAACCTCTCA
GGAGGCGAGAAAACCCTTAGTTCCTTGGCCTTAGTGTTTGCTCTTCATCACTACAAGCCCACTCCCCTCT
ACTTCATGGATGAGATTGATGCAGCTCTGGATTTTAAAAATGTGTCTATTGTTGCATTTTATATATATGA
GCAAACAAAAAATGCCCAGTTCATAATAATCTCTCTTCGAAATAATATGTTTGAGATTTCAGACAGACTT
ATTGGCATCTATAAAACATATAATAGTACAAAAAGTGTTGCAGTGAACCCAAAACAAATTGCGTCTAAAG
GACTCTGTTGA

Translation (1286 aa):
MRRKGTKPSTACHQEEGPPPSQDGAHSDEEMEQPAGEAESAAPAKPPGEELDNRSLEEILNSIPPPPPPA
MASEAGAPRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKL
SVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVLPNSNFYVSRTAYRDSTSVYHISGKKKTFKDVGNL
LRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLEDIIGCGRLNEPIKVLCRRVEILNEHRG
EKLNRVKMVEKEKDALEGEKNIAIEFLTLENEMFKKKNHICQYYIYDLQNRIAEITTQKEKIHEDTKEIT
EKSNVLSNEMKAKNSAVKDVEKKLNKVTKFIEQNKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQKDK
EKVEELKSVPAKSKTVINETTTRNNSLEKEREKEEKKLKEVMDSLKQETQGLQKEKEIQEKELMGFNKSV
NEARSKMEVAQSELDIYLSRHNTAVSQLSKAKEALITASETLKERKAAIKDINTKLPQTQQELKEKEKEL
QKLTQEEINLKSLVHDLFQKVEEAKSSLAMNRSRGKVLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIA
ISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKKMSKIQTPENTPRLFDLVKVKNE
EIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGGSKVMRGRMGSSVIDEIS
VEEVNKMESQLERHSKQAMQIQEQKVQHEEAVVKLRHSERDMRNTLEKFAASIQGLSEQEEYLCVQIKEL
EANVLTTAPDRKQQKLLEENVSVFKKEYDAVAEKAGKVEAEIKRLHNTIIDINNRKLKAQQNKLDTINKQ
LDECASAITKAQVAIKTADRNLKKAQDSVCRTEKEIKDTEKEINDLKTELKNIEDKAEEVINNTKTAETS
LPEIQKEHRNLLQELKVIQENEHALQKDALSIKLKLEQIDGHISEHNSKIKYWQKEISKIKLHPVEDNPV
ETVAVLSQEELEAIKNPESITNEIALLEAQCREMKPNLGAIAEYKKKEDLYLQRVAELDKITSERDNFRQ
AYEDLRKQRLNEFMAGFYVITNKLKENYQMLTLGGDAELELVDSLDPFSEGIMFSVRPPKKSWKKIFNLS
GGEKTLSSLALVFALHHYKPTPLYFMDEIDAALDFKNVSIVAFYIYEQTKNAQFIIISLRNNMFEISDRL
IGIYKTYNSTKSVAVNPKQIASKGLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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