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Report for CCDS29313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29313.1 Public Mus musculus 18 Lman1 23 108 98 CCDS HistoryNCBI Gene:70361Re-query CCDS DB by CCDS ID:29313.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048260.14 ENSMUSP00000040140.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048260.14Link to Ensembl Protein Viewer:ENSMUSP00000040140.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048260Re-query CCDS DB by Protein ID:ENSMUSP00000040140
Original member Current member EBI ENSMUST00000120461.8 ENSMUSP00000113326.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120461.8Link to Ensembl Protein Viewer:ENSMUSP00000113326.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120461Re-query CCDS DB by Protein ID:ENSMUSP00000113326
Original member Current member EBI ENSMUST00000236866.1 ENSMUSP00000158495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236866.1Link to Ensembl Protein Viewer:ENSMUSP00000158495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236866Re-query CCDS DB by Protein ID:ENSMUSP00000158495
Original member Current member NCBI NM_001172062.1 NP_001165533.1 Accepted alive Link to Nucleotide Sequence:NM_001172062.1Link to Protein Sequence:NP_001165533.1Re-query CCDS DB by Nucleotide ID:NM_001172062Re-query CCDS DB by Protein ID:NP_001165533Link to BLAST:NP_001165533.1
Original member Current member NCBI NM_027400.3 NP_081676.1 Accepted alive Link to Nucleotide Sequence:NM_027400.3Link to Protein Sequence:NP_081676.1Re-query CCDS DB by Nucleotide ID:NM_027400Re-query CCDS DB by Protein ID:NP_081676Link to BLAST:NP_081676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165533.1 517 Q9D0F3 517 100% 0 0
NP_081676.1 517 Q9D0F3 517 100% 0 0

Chromosomal Locations for CCDS 29313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65983851 65983887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65984153 65984274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65987755 65987905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65991332 65991402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65991494 65991687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65993075 65993207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65993579 65993637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65994785 65994908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65996682 65996781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65997600 65997661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65998375 65998482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65998566 65998720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66002374 66002611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCGGTGTCCAGGCGGAGGGTTCCCCAGGCTGGAGCGCGGTCGTTCTTCTGCGCCCTGCTGCTGTCTT
TCAGCCAATTCACCGGGAGCGACGGCACGGGAGGCGACGCTGCGGCTCCCGGCGCCGCGGGCACCCAGGC
CGAGTTGCCACACCGCCGTTTCGAGTACAAATACAGCTTTAAGGGGCCGCATCTGGTGCAGAGCGATGGG
ACCGTGCCCTTTTGGGCCCACGCGGGGAATGCTATTCCAAGTGCAGATCAGATTCGAATAGCGCCGTCAT
TAAAAAGCCAAAGAGGTTCCGTGTGGACCAAAGCAAAAGCAGCCTTCGAGAACTGGGAAGTGGAAGTGAC
ATTCCGAGTGACCGGAAGAGGTCGAATTGGAGCCGATGGCTTAGCAATTTGGTATACAGAAAATCAAGGC
TTGGACGGCCCTGTGTTTGGATCAGCTGATACGTGGAATGGTGTTGGAATATTTTTTGATTCTTTTGACA
ATGATGGAAAGAAAAATAATCCTGCTATAGTAGTTATAGGCAACAATGGACAAATCAATTATGACCATCA
AAATGATGGTGCCACTCAAGCTTTAGCGAGTTGTCAGAGGGACTTTCGTAATAAACCCTATCCTGTCCGG
GCAAAGATTACGTATTACCAGAAGACACTGACAGTCATGATCAATAATGGCTTTACACCAGATAAAAATG
ATTATGAATTCTGTGCCAAAGTGGAAAACATGGTTATCCCCACACAAGGTCATTTTGGGATATCAGCGGC
AACAGGGGGACTTGCAGATGACCACGACGTTCTTTCTTTCCTGACTTTCCAACTGACCGAGCCTGGAAAA
GAGCCACCTACAGCAGAAAAAGACATTTCAGAAAAAGAAAAGGAAAAGTATCAAGAGGAGTTTGAGCACT
TCCAGCAAGAATTAGACAAGAAGAAGGAGGAATTCCAGAAGGGCCACCCTGACCTCCAGGGGCAGCCAGC
GGATGACATCTTCGAGAGCATAGGCGATCGGGAGCTGAGACAGGTGTTTGAAGGACAGAATCGTATTCAT
CTGGAGATCAAGCAGCTGAACCGGCAGCTGGATATGATTCTTGATGAACAGAGGAGGTACGTCTCGTCCC
TGACAGAGGAGATCTCCAGGAGAGGAGCAGGAACCCCGGGACAGCCTGGGCAGGTCTCTCAGCAGGAACT
GGACACCGTTGTGAAGAGCCAGCAGGAGATTCTGAGACAAGTGAATGAGGTGAAGAACTCCATGAGTGAA
ACTGTGCGGCTGGTGAGTGGCATCCAGCACCCGGGCTCAGCAGGCGTCTACGAGACAACTCAGCACTTCA
TGGACATCAAGGAACACCTGCACGTGGTGAAGAGAGATATCGACAGCCTCGCACAGCGCAGCATGCCATC
TAATGAAAAACCAAAATGCCCAGACCTACCACCATTCCCGTCGTGTCTATCCACGATCCACTTTGTGATA
TTTGTAGTGGTGCAGACAGTGTTGTTCGTTGGCTATATCATGTACAGGACTCAGCAAGAAGCAGCTGCCA
AAAAATTCTTTTGA

Translation (517 aa):
MAVSRRRVPQAGARSFFCALLLSFSQFTGSDGTGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDG
TVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQG
LDGPVFGSADTWNGVGIFFDSFDNDGKKNNPAIVVIGNNGQINYDHQNDGATQALASCQRDFRNKPYPVR
AKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGK
EPPTAEKDISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPADDIFESIGDRELRQVFEGQNRIH
LEIKQLNRQLDMILDEQRRYVSSLTEEISRRGAGTPGQPGQVSQQELDTVVKSQQEILRQVNEVKNSMSE
TVRLVSGIQHPGSAGVYETTQHFMDIKEHLHVVKRDIDSLAQRSMPSNEKPKCPDLPPFPSCLSTIHFVI
FVVVQTVLFVGYIMYRTQQEAAAKKFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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