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Report for CCDS24081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24081.1 Public Mus musculus 10 Polr3b 23 108 98 CCDS HistoryNCBI Gene:70428Re-query CCDS DB by CCDS ID:24081.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077175.6 ENSMUSP00000076418.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077175.6Link to Ensembl Protein Viewer:ENSMUSP00000076418.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077175Re-query CCDS DB by Protein ID:ENSMUSP00000076418
Original member Current member NCBI NM_027423.2 NP_081699.1 Accepted alive Link to Nucleotide Sequence:NM_027423.2Link to Protein Sequence:NP_081699.1Re-query CCDS DB by Nucleotide ID:NM_027423Re-query CCDS DB by Protein ID:NP_081699Link to BLAST:NP_081699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081699.1 1133 P59470 1133 100% 0 0

Chromosomal Locations for CCDS 24081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84622467 84622538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84628250 84628282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84628483 84628539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84628627 84628691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84631785 84631860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84632455 84632555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84634901 84634992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84638055 84638172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84639742 84639850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84646796 84646918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84652674 84652793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84655945 84656079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84667322 84667483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84673328 84673528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84674557 84674719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84676883 84677036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84679746 84679820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84680366 84680464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84684177 84684304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84692797 84693006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84695555 84695713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84696949 84697066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84699399 84699541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84713629 84713732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84714245 84714411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84718410 84718523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84720344 84720517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84725651 84725780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3402 nt):
ATGGATGTTCTAGCCGAGGAGTTCGGGAGCCTGACTCCGGAGCAGCTGACTGCGCCGATCCCGACTGTGG
AGGAAAAATGGAGGCTGCTTCCAGCATTTTTAAAGGTTAAAGGCCTGGTGAAACAGCACATAGACTCCTT
TAACTATTTCATTAATGTAGAGATAAAGAAGATAATGAAAGCCAATGAAAAGGTTACAAGTGATGCTGAC
CCCATGTGGTACTTAAAATACCTTAATATCTATGTCGGACTTCCTGATGTTGAAGAAAGCTTCAATGTAA
CTAGACCAGTGTCCCCTCATGAGTGCCGTCTGAGGGACATGACGTACTCCGCCCCAATCACAGTGGACAT
TGAGTATACCCGAGGCAGCCAGAGGATAATCCGCAACGCCTTACCCATTGGCAGAATGCCCATCATGCTC
CGAAGCTCGAACTGTGTTCTAACAGGGAAAACGCCGGCAGAGTTTGCCAAACTGAATGAGTGTCCACTAG
ACCCAGGTGGCTACTTCATTGTTAAAGGAGTGGAAAAAGTCATTCTTATCCAAGAGCAGCTGTCCAAGAA
CAGGATCATTGTGGAGGCCGACAGGAAAGGAGCCGTTGGAGCCTCAGTTACCAGCTCCACCCATGAGAAG
AAAAGCAGAACCAACATGGCCGTGAAACAGGGTCGATTCTATCTGAGGCACAACACCCTGTCTGAAGATA
TCCCCATTGTCATCATATTTAAGGCCATGGGTGTGGAGAGTGACCAGGAAATCGTGCAGATGATTGGAAC
AGAGGAGCACGTGATGGCTGCATTTGGGCCCAGCTTGGAGGAGTGCCAGAAAGCTCAGATCTTCACCCAG
ATGCAGGCATTGAAGTATATAGGGAATAAAGTAAGAAGACAAAGAATGTGGGGAGGTGGACCAAAGAAAA
CCAAAATAGAAGAAGCAAGAGAACTCCTGGCTTCTACCATTCTGACCCACGTACCAGTGAAGGAATTCAA
TTTCCGAGCTAAGTGTATCTACACTGCAGTGATGGTGCGAAGGGTGATCCTGGCCCAAGGAGATAACAAG
GTCGATGACAGAGACTATTATGGCAACAAACGACTGGAATTGGCAGGACAGCTCTTATCTCTTCTTTTTG
AAGATTTGTTTAAAAAGTTTAATTCAGAAATGAAGAAGATTGCAGACCAAGTGATTCCTAAACAGAGAGC
AGCCCAGTTTGACGTCGTTAAACACATGCGCCAAGACCAGATTACCAACGGCATGGTCAATGCCATCTCC
ACGGGAAATTGGTCTCTGAAGAGATTTAAGATGGACCGACAGGGTGTGACCCAGGTGCTGTCTCGCTTGT
CATATATATCTGCACTCGGCATGATGACAAGAATCTCTTCCCAGTTTGAAAAGACGAGGAAAGTGAGTGG
CCCTCGTTCTCTGCAGCCGTCTCAGTGGGGAATGCTCTGTCCCTCCGACACACCTGAAGGGGAGGCCTGT
GGTTTGGTTAAGAACTTGGCCCTCATGACACATATAACAACTGACATGGAAGATGGACCCATTATTAAGT
TAGCTGGGAACTTGGGAGTAGAAGATGTGAATTTATTATGTGGAGAAGAGCTCTCTTACCCAAATGTGTT
TCTTGTCTTCCTGAATGGTAACATCCTTGGTGTCATTCGAGACCATAAAAAGCTTGTCAGCACATTCCGG
CTGATGCGAAGAGCAGGCTATATCAATGAATTTGTTTCTATCTCCACAAACCTTACGGATCGCTGTGTTT
ATATTTCCTCTGATGGCGGGCGCTTGTGCAGGCCTTACATAATTGTTAAGAAACAAAAGCCAGCTGTCAC
AAATAAGCACATGGAAGAGTTGGCTCAAGGCTACAGGAATTTTGAAGATTTCTTACATGAAAGTCTAGTT
GAATACTTAGATGTGAATGAAGAAAATGACTGTAACATTGCGCTCTACGAACATACAATTAATAAAGACA
CCACCCACTTGGAGATTGAACCCTTCACTCTGCTTGGTGTTTGTGCCGGCCTGATCCCATACCCTCATCA
CAACCAGTCTCCAAGAAACACCTACCAGTGTGCTATGGGCAAGCAAGCCATGGGTACCATTGGCTACAAT
CAACGGAACAGAATTGATACACTTATGTATCTACTAGCATATCCACAAAAGCCCATGGTTAAAACAAAAA
CAATCGAGTTGATAGATTTTGAGAAGTTGCCGGCTGGCCAGAACGCAACTGTTGCCGTGATGAGCTACAG
CGGCTATGACATTGAGGACGCGCTGGTTTTGAACAAGGCCTCTCTGGACAGAGGTTTTGGGCGTTGTCTT
GTGTATAAAAATGCTAAGTGCACCTTGAAACGATACACCAATCAGACCTTTGATAAGGTGATGGGTCCCA
TGTTGGATGCTGCTACCAGAAAACCCATCTGGCGACATGAAATTTTAGATGCAGATGGCATTTGTTCTCC
AGGTGAGAAAGTGGAAAACAAACAGGTGCTTGTAAACAAGTCCATGCCCACAGTGACACAGATTCCTTTG
GAAGGGAGCAACGTGCCACAGCAACCACAGTATAAAGATGTGCCTATCACGTACAAAGGTGCGACAGACT
CCTACATCGAGAAAGTGATGATCTCTTCCAACGCCGAGGATGCTTTCCTCATCAAGATGCTCCTGAGACA
GACGCGGCGCCCAGAGATTGGAGACAAATTCAGCAGTCGCCATGGACAAAAGGGTGTCTGTGGCCTGATC
GTCCCCCAGGAAGACATGCCGTTCTGTGATTCTGGCATCTGTCCCGACATCATAATGAACCCACACGGCT
TCCCATCAAGAATGACGGTTGGAAAGTTAATTGAGCTGCTGGCTGGCAAGGCAGGCGTGTTAGACGGCAG
GTTCCACTACGGCACTGCCTTTGGAGGGAGTAAAGTGAAGGATGTGTGTGAAGATCTCGTTCGCCATGGT
TACAACTACCTGGGGAAGGACTACGTCACCTCAGGCATCACAGGTGAGCCCTTAGAAGCATACATCTATT
TTGGACCTGTGTATTATCAGAAACTGAAACACATGGTGCTGGATAAAATGCACGCCCGGGCCCGAGGACC
ACGAGCTGTCCTTACCAGGCAGCCCACTGAAGGGCGGTCGCGCGATGGTGGCTTGCGACTTGGAGAAATG
GAACGCGACTGTCTAATCGGCTATGGAGCGAGTATGCTTTTGCTGGAGAGACTAATGATCTCAAGTGATG
CCTTTGAGGTTGACGTCTGCGGGCAGTGTGGACTCCTGGGATATTCTGGCTGGTGCCACTACTGCAAATC
TTCGTGCCACGTGTCCTCCCTCCGCATCCCGTATGCCTGCAAGCTGCTCTTCCAGGAGTTACAGTCCATG
AACATCATCCCCAGGCTGAAACTGGCCAAGTACAACGAGTAA

Translation (1133 aa):
MDVLAEEFGSLTPEQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD
PMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIML
RSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEK
KSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQ
MQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNK
VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIS
TGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEAC
GLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFR
LMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLV
EYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYN
QRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCL
VYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL
EGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI
VPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHG
YNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM
ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSM
NIIPRLKLAKYNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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