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Report for CCDS48250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48250.1 Public Mus musculus 1 Gulp1 23 108 98 CCDS HistoryNCBI Gene:70676Re-query CCDS DB by CCDS ID:48250.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074525.9 ENSMUSP00000074115.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074525.9Link to Ensembl Protein Viewer:ENSMUSP00000074115.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074525Re-query CCDS DB by Protein ID:ENSMUSP00000074115
Original member Current member NCBI NM_028450.3 NP_082726.2 Accepted alive Link to Nucleotide Sequence:NM_028450.3Link to Protein Sequence:NP_082726.2Re-query CCDS DB by Nucleotide ID:NM_028450Re-query CCDS DB by Protein ID:NP_082726Link to BLAST:NP_082726.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082726.2 304 Q8K2A1-1 304 100% 0 0

Chromosomal Locations for CCDS 48250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44689188 44689215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44708617 44708678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44744474 44744545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44754343 44754441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44766014 44766151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44773271 44773387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44774053 44774145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44780968 44781106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44788448 44788542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44794950 44795021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAACCGTGCTTTCAGCAGAAAGAAAGACAAAACATGGATGCATACGCCTGAAGCTTTATCAAAACATT
ACATTCCCTATAATGCAAAGTTTCTTGGCAGTACCGAAGTGGAGCAGCCAAAGGGAACAGAAGTTGTGAG
AGATGCTGTCAGGAAGCTGAAGTTTGCAAGACACATCAAAAAATCTGAAGGCCAGAAGATTCCTAAAGTT
GAATTGCAAATATCAATTTATGGAGTAAAAATTCTCGAACCCAAAACAAAGGAGGTTCAACACAACTGCC
AGCTTCATAGAATATCATTTTGCGCAGATGATAAAACTGACAAGAGGATATTCACTTTCATATGCAAAGA
TTCTGAGTCAAATAAACATTTGTGTTTTGTATTTGACAGCGAAAAGTGTGCTGAAGAAATTACATTAACA
ATTGGCCAAGCTTTTGACTTGGCATACAGAAAATTTCTAGAATCTGGAGGAAAAGATGTAGAGACAAGAA
AACAGATTGCTGGAATGCAGAAAAGAATCCAAGACTTAGAAACAGAAAACATGGAACTTAAAAATAAAGT
ACAAGATTTAGAAAGCCGGTTGAGAACAACTCAAGTATCCACGTCTCCAGCCCATGGTGTGACAGTGATG
TCTCCTTCCACTGATATCTTTGACATGATTCCATTTTCCCCAATATCACATCAGTCTCCAACATCTGCTC
GCAATGGCACACAGCTACCACCCATCCCTAGCAGATCTGCTGAGACCAAACGGGACCTTTTTGGAGCTGA
ACCTTTTGACCCATTTAACTGTGGATCAGGGGACTTTCCTCCTGATATTCAGTCCAAATTGGATGAGATG
CAGGAGGGGTTCAAAATGGGACTAACTCTTGAAGGAACAGTGTTTTGTCTCGACCCATTAGACAGCAGGT
GCTGA

Translation (304 aa):
MNRAFSRKKDKTWMHTPEALSKHYIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIKKSEGQKIPKV
ELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCFVFDSEKCAEEITLT
IGQAFDLAYRKFLESGGKDVETRKQIAGMQKRIQDLETENMELKNKVQDLESRLRTTQVSTSPAHGVTVM
SPSTDIFDMIPFSPISHQSPTSARNGTQLPPIPSRSAETKRDLFGAEPFDPFNCGSGDFPPDIQSKLDEM
QEGFKMGLTLEGTVFCLDPLDSRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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