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Report for CCDS27911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27911.1 Public Mus musculus 16 Zfp597 23 108 98 CCDS HistoryNCBI Gene:71063Re-query CCDS DB by CCDS ID:27911.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090522.4 ENSMUSP00000088009.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090522.4Link to Ensembl Protein Viewer:ENSMUSP00000088009.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090522Re-query CCDS DB by Protein ID:ENSMUSP00000088009
Original member Current member NCBI NM_001033159.2 NP_001028331.2 Accepted alive Link to Nucleotide Sequence:NM_001033159.2Link to Protein Sequence:NP_001028331.2Re-query CCDS DB by Nucleotide ID:NM_001033159Re-query CCDS DB by Protein ID:NP_001028331Link to BLAST:NP_001028331.2

Chromosomal Locations for CCDS 27911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3865631 3866730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3871150 3871276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3872059 3872091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGTCCACGCTCCCCACATCGGATGAGCAGAGACCACTGCTATTTGAAGATCTGGATGTGTATTTTT
CTCAAGAGGAATGTGTGAGTCTGCACCCTGCTCAGAAGACCCTCAGCAGAGAAGCCCCATTGAAGAGTTT
TGAGAATTTGGACTCGATAGGAGGGGAAGACCAGACTGAAAGCAGTCAGGAGTTGAGCCTCGAGCCTGTG
GAACTTGAAGAGCTGTCTCTAGAAAAGGACTCCATTGCTGCACCCGTTGTTCACTACTCTGAGCAATCTG
AGCAGGATGATGAAATACTTGAAGACAAAATGTCAGGTGGAACGTTGACTTGCAAGACCAAACTTATAAG
CCTCTTGGTTACCATTGACAACCAAACCCCATTAGTAGAATTATCTCAATGTTTAGGAGTTAAAACACTT
TCAGATATTATTGAAGTTCCTTGGGAAGAAGCCAAAAATGTGTACAAGTGTCCTGACTGTGACCAAAGCT
TCAGTGATAATACATACCTTGTTTTGCATCAGAAAATTCATTTAAGAGAGAAAAAGTATAAATGTAGTAC
CTGTGAGAAGACCTTCAGTCACCGAACCAACCTGAGGACACATAAGCGAATCCACACTGGTGAGAAGCCT
TACAAGTGTACCGAGTGTGCTGCCAGCTTCCGACAGCAGTCACACCTGTCTAGGCACATGAATAGCCATT
TAAAGGAGAAACTATATACATGTAGTGTATGTGGGAGAGGTTTTATGTGGCTCCCAGGATTGGCAGAACA
TCAGAAGAGTCATACTGATAAGAAATCTTATGAATGTGCTGACCACAATCGGGAAGCAAATCTGGCTTTG
CCTGAAGAGAGAGGTTCATCAGACACACTGCCCCAGCACACACACTGTGTGAAGACCTTGGAGCAGCCCT
CAGACCCTACTCTCCCTGAGAAAGACCATAAGGAGGACTCGAAAAACTGCAGTATTGATGATGAGGACTT
TTTTTCATTCTCCAGATTCAAACCCTTACAGTGTCTTGATTGTGACATGACTTTTCCTTGTTTCTCGGAG
CTTGTCTCTCACCAAACCATTCATGACCTGGAAAAACCTCATAAGTGCAAAACATGTACAAAAACTTTTG
CTTTCGAGTCAGAGCTTGTATCCCATGAGAAGAGCCACAGAAGAGAAGAGCCTTTTAAATGCACAGTGTG
TGGGAAGAGTTTCAGTGTGAGTATGCAGCTCGTCACTCATAAACGAGCCCATAGGAGAAACAGCAAGTAA

Translation (419 aa):
MASTLPTSDEQRPLLFEDLDVYFSQEECVSLHPAQKTLSREAPLKSFENLDSIGGEDQTESSQELSLEPV
ELEELSLEKDSIAAPVVHYSEQSEQDDEILEDKMSGGTLTCKTKLISLLVTIDNQTPLVELSQCLGVKTL
SDIIEVPWEEAKNVYKCPDCDQSFSDNTYLVLHQKIHLREKKYKCSTCEKTFSHRTNLRTHKRIHTGEKP
YKCTECAASFRQQSHLSRHMNSHLKEKLYTCSVCGRGFMWLPGLAEHQKSHTDKKSYECADHNREANLAL
PEERGSSDTLPQHTHCVKTLEQPSDPTLPEKDHKEDSKNCSIDDEDFFSFSRFKPLQCLDCDMTFPCFSE
LVSHQTIHDLEKPHKCKTCTKTFAFESELVSHEKSHRREEPFKCTVCGKSFSVSMQLVTHKRAHRRNSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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