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Report for CCDS23846.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23846.2 Public Mus musculus 10 Mcm9 23 108 98 CCDS HistoryNCBI Gene:71567Re-query CCDS DB by CCDS ID:23846.2See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23846.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23846.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237608.1 ENSMUSP00000157761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237608.1Link to Ensembl Protein Viewer:ENSMUSP00000157761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237608Re-query CCDS DB by Protein ID:ENSMUSP00000157761
Original member Current member NCBI NM_027830.3 NP_082106.3 Accepted alive Link to Nucleotide Sequence:NM_027830.3Link to Protein Sequence:NP_082106.3Re-query CCDS DB by Nucleotide ID:NM_027830Re-query CCDS DB by Protein ID:NP_082106Link to BLAST:NP_082106.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082106.3 1134 Q2KHI9-1 1134 100% 0 0

Chromosomal Locations for CCDS 23846.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 53537324 53538767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53540938 53541083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53541537 53541619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53547403 53547606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53548497 53548699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53563283 53563457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53611352 53611471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53612827 53612952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53615852 53616052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53620134 53620215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53622756 53623072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53625716 53626019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGAATAGTGAGCAGGTCACCCTGGTGGGTCAGGTGTTTGAGTCCTATGTTTCAGAGTACCATAAGAACG
ATATTCTTCTGATCCTGAAAGAAAGAGATGAAGATGCTCACTACCCGGTTGTGGTTAATGCTATGAGCCT
TTTCGAGACCAACATGGAAATTGGGGACTATTTCACCGTGTTCCCCAATGAAGTACTAACAGTTTTTGAC
AGTGCACTTCGAAGGTCAGCCTTGGCAATTCTGCAGTCCCTTCCTGAGACGGAGGGGTTATCCATGAAGC
AGAATCTTCATGCCAGGATATCAGGTTTGCCTGTTTGTCCAGAACTGGTCAGGGAACACATTCCCAAAAC
CAAGGATGTGGGACACTTCTTATCTGTCACTGGGACAGTGATCCGAACGAGTCTGGTGAAGGTCTTGGAG
TTCGAGCGGGATTACATGTGTAACAAATGCAAGCATGTGTTCATGGTGGAGGCAGACTTCGAGCAGTATT
ACACCTTCAGTCGGCCATCGTCATGTCCAAGTTTAGCCAGCTGTGACTCCTCAAAATTCTCTTGCCTCTC
AGACTTGTCTTCATCTCCAGCCAGATGTCGGGATTACCAGGAAATCAAAATTCAGGAGCAGGTGCAAAGG
CTGTCTGTTGGAAGTATCCCACGGTCTATGAAAGTTATTCTGGAAGATGACCTAGTTGACAGTTGCAAAT
CTGGAGATGACCTCACCATCTATGGGGTTGTAATGCAACGGTGGAAACCCTTTCAGCGAGATGTACGCTG
TGAAGTTGAGATTGTCTTGAAAGCCAACTATGTCCAAGTGAATAATGAGCAATCCTCGGGGATGGTCATG
GATGAGGACACTCGAAAAGAATTTGAAGACTTCTGGGAACACTATAAGAGTGACCCCTTTGCAGGGAGGA
ATGAAATATTGGCCAGCTTGTGTCCTCAAGTTTTTGGGATGTATCTAGTGAAGCTTGCTGTGGCCATGGT
ACTGGCTGGTGGAATTCAAAGAACTGATGCTGCAGGAACCAGGGTTAGAGGGGAATCTCACCTTTTATTG
GTTGGGGATCCTGGCACAGGGAAATCACAATTCCTTAAATATGCAGCAAAGATTACCCCAAGGTCCGTTT
TGACCACAGGAATTGGATCTACTAGTGCAGGTCTGACCGTGACAGCTGTCAAAGACTCAGGAGAATGGAA
TCTAGAGGCTGGGGCTTTGGTGCTTGCAGATGCTGGTCTCTGCTGTATTGACGAATTTAACAGCCTCAAA
GAACATGACAGGACAAGCATCCATGAAGCAATGGAGCAACAAACCATAAGTGTTGCTAAGGCTGGCCTTG
TTTGTAAGCTGAACACAAGGACCACCATCCTGGCAGCAACTAACCCCAAAGGCCAGTATGACCCCAAGGA
GTCTGTGTCTGTGAACATTGCCCTCGGGAGCCCACTCTTAAGTCGATTTGACCTTGTCCTGGTTTTGCTC
GACACTAGGAATGAAGACTGGGATCGTATCATTTCTTCCTTTATCTTAGAAAATAAAGGTTATCCAAGCA
AATCAGAGAATCTGTGGAGCATGGAGAAGATGAAAACCTACTTCTGCCTCATTCGGAATCTCCACCCCAC
ACTGTCTGAAGTGAGCAATCAAGTCCTCCTTCGATACTACCAAATGCAAAGGCAGAGTGATTCCCGGAAT
GCAGCCCGGACAACCATCCGCCTGTTAGAAAGCTTGATCCGATTAGCAGAAGCTCACGCTCGCCTGATGT
TCCGCAGTGCCGTGACTCTGGAAGATGCCGTTACAGCTGTATCTGTGATGGAGTCTTCAATGCAGGGAGG
TGCTCTGCTAGGAGGTGTGAATGCTCTCCACACTTCCTTCCCTGAAAACCCCCGTGCACAGTACCAGAGG
CAGTGTGAACTCATTCTGGAAAAGCTGGAACTCCAGGGCCTCTTGCAGGAAGAACTTCGAAGACTGGAAA
GGTTACAGAATGAGAGTGTACACCAATGCCAGTCACATTCACTAGAGGAGGAGGTGGCTCCAGGTTCCTG
CAGAAATGATCCCAGGGACAAGCCAAGGCTCAGGACTTCAACACAGCAGGAACAGAGCTGTAGCTGGAGT
TCCACAGAGAGATCTGGTGCAGACTCCCCGCCTGGTCCAGGGCTTAATAGACCAACAAGTTGTAACAACT
CAGCTGAGAACAGAGATGGCAGAGGTGACGGTTTAGACTGGTTGGACCCCACATCAAGTCCTGAGATTGC
ACCAGAAAGCACTATTGTGTCTCCCAATGTGAAAACAACTGAGAAAAATGTGAATTTGAAAATCTCCAAC
AATAAATCTCAGGGCAAGGAGAAGCATGGGCCACAGCAAAGAAGCAAATTATTAGAAGCTGGACATCTTC
CATCATCAGGAGCCATGAATGCCCCCTTACGGTCTCACGGTGTTAAGCGTACAAAGGCAAGTCAGGCAGT
GGTTGTATCTGAAGCAGGACGGGGTGATGAAGAAGACTCTGTGCCCCGAAGACTCCCCAAGCTGCTGAAG
GAGGGGTCACAGAATGTGTGCAGAAGCACAACCAGAGTGCGACCACTGCCACCCACTGTCCCTCTGTCCC
TGTCTATCCCTTCACCTGGGTCAGGAAAAAGATCAGGAACACCCAAAAGAAAGAGACGGAAATCTGCTCA
GGTGGAAGAGCCTGAACCTGAAGGTATGGAGACTCCAACAGTAAAGCTGGCCAAATTCACATTTAAACAG
AAGACAAAACTGACCCACTCCCCCGAAGGCCAAGGCCCCATACCTCCCAGTGCTAGTGAAATAGCAGTTG
ACAGTTCTAAAATTCCCCAACAAAGAACAAGAAGAGAAGCAGCTGTGCCTGTGGTAGCGCCAGGAAAGTC
GACATCCACCTCAGGAGACAGATGCTCTGACCAGCTGCACGGAAAGACAAAGGAGCTCTCAAGGCAGCCA
CCAGACAGTAATCCACCAAGAGAGGAGAGGGAACAGGGCCCCAAAAGAAGGGTTATTCAGCCCAAACCGG
AGCTTGGGAACCAGGCTGGGCATTCGCATCTAGCCTGTGAGAAAGACAGAAAGGAAGGGGTTTCCTGCGG
TAATAAAAGCAGCAAGGTTCATGCTGGCACCATAGCCAGACTGGCAAGCTTCTCCTTCACTTCCCCATCA
GAATCCAAATCGGAATCCCTCCCTCCTGAAAGGAAGGACAGCAGGGACAGCAGGGACAGCAGGGACAGCA
GGGACAGGTGCCACAGCCCTCCTGCGACCACAGCTCCAGTGCTCGGCCAGCAAAGGCAGACTTTCCAGCT
GCAGCAGCCCACAGAGAGAGCGAATCTTTCCACCCTCTCCCTCTTCACTCTGTCGGAACTAGATGACGAA
GCATTAGATTTTGACTGGGAGGAAGAGATGAGGAAAAAGCCATGA

Translation (1134 aa):
MNSEQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMSLFETNMEIGDYFTVFPNEVLTVFD
SALRRSALAILQSLPETEGLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLE
FERDYMCNKCKHVFMVEADFEQYYTFSRPSSCPSLASCDSSKFSCLSDLSSSPARCRDYQEIKIQEQVQR
LSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGVVMQRWKPFQRDVRCEVEIVLKANYVQVNNEQSSGMVM
DEDTRKEFEDFWEHYKSDPFAGRNEILASLCPQVFGMYLVKLAVAMVLAGGIQRTDAAGTRVRGESHLLL
VGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGLTVTAVKDSGEWNLEAGALVLADAGLCCIDEFNSLK
EHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPKGQYDPKESVSVNIALGSPLLSRFDLVLVLL
DTRNEDWDRIISSFILENKGYPSKSENLWSMEKMKTYFCLIRNLHPTLSEVSNQVLLRYYQMQRQSDSRN
AARTTIRLLESLIRLAEAHARLMFRSAVTLEDAVTAVSVMESSMQGGALLGGVNALHTSFPENPRAQYQR
QCELILEKLELQGLLQEELRRLERLQNESVHQCQSHSLEEEVAPGSCRNDPRDKPRLRTSTQQEQSCSWS
STERSGADSPPGPGLNRPTSCNNSAENRDGRGDGLDWLDPTSSPEIAPESTIVSPNVKTTEKNVNLKISN
NKSQGKEKHGPQQRSKLLEAGHLPSSGAMNAPLRSHGVKRTKASQAVVVSEAGRGDEEDSVPRRLPKLLK
EGSQNVCRSTTRVRPLPPTVPLSLSIPSPGSGKRSGTPKRKRRKSAQVEEPEPEGMETPTVKLAKFTFKQ
KTKLTHSPEGQGPIPPSASEIAVDSSKIPQQRTRREAAVPVVAPGKSTSTSGDRCSDQLHGKTKELSRQP
PDSNPPREEREQGPKRRVIQPKPELGNQAGHSHLACEKDRKEGVSCGNKSSKVHAGTIARLASFSFTSPS
ESKSESLPPERKDSRDSRDSRDSRDRCHSPPATTAPVLGQQRQTFQLQQPTERANLSTLSLFTLSELDDE
ALDFDWEEEMRKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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