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Report for CCDS37627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37627.1 Public Mus musculus 17 Cdc5l 23 108 98 CCDS HistoryNCBI Gene:71702Re-query CCDS DB by CCDS ID:37627.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024727.9 ENSMUSP00000024727.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024727.9Link to Ensembl Protein Viewer:ENSMUSP00000024727.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024727Re-query CCDS DB by Protein ID:ENSMUSP00000024727
Original member Current member NCBI NM_152810.2 NP_690023.1 Accepted alive Link to Nucleotide Sequence:NM_152810.2Link to Protein Sequence:NP_690023.1Re-query CCDS DB by Nucleotide ID:NM_152810Re-query CCDS DB by Protein ID:NP_690023Link to BLAST:NP_690023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690023.1 802 Q6A068 802 100% 0 0

Chromosomal Locations for CCDS 37627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45392200 45392304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45392993 45393205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404594 45404791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45407796 45408038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45408336 45408416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45410774 45410938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45411828 45411990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45413122 45413270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45415553 45415741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45416945 45417089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45419601 45419819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45424501 45424600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45425852 45425979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45426520 45426681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45427939 45428042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45433391 45433435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGCCCCGGATTATGATCAAAGGGGGAGTGTGGAGGAACACGGAGGATGAAATTCTGAAAGCAGCGGTAA
TGAAATATGGGAAAAACCAGTGGTCTAGGATTGCCTCATTGCTGCATAGGAAATCGGCAAAGCAGTGCAA
AGCCAGATGGTACGAATGGCTGGATCCAAGTATTAAAAAAACTGAATGGTCCAGAGAAGAGGAAGAAAAA
CTCTTGCACCTGGCCAAGCTGATGCCAACGCAGTGGAGGACCATTGCTCCGATCATAGGAAGAACAGCAG
CCCAGTGCTTGGAACACTATGAGTTCCTCCTGGACAAAACTGCCCAAAGGGACAATGAAGAAGAAACAAC
AGATGACCCCCGAAAGCTTAAGCCTGGAGAGATAGATCCAAACCCAGAGACCAAGCCAGCCCGGCCTGAC
CCGATAGACATGGATGAGGATGAACTTGAGATGCTCTCCGAGGCTCGAGCCCGTCTGGCCAATACTCAAG
GAAAGAAGGCTAAAAGGAAAGCAAGAGAAAAGCAGTTGGAAGAAGCCAGGCGCCTTGCTGCCCTCCAGAA
AAGACGAGAGCTTCGAGCAGCTGGCATAGAGATTCAGAAGAAAAGGAAAAAGAAGAGAGGCGTTGATTAT
AATGCTGAAATCCCATTTGAAAAAAAGCCTGCTCTTGGTTTTTATGATACTTCTGAGGAGAATTACCAGG
CCCTTGATGCAGATTTCAGGAAACTGCGGCAGCAGGATCTTGATGGAGAGCTAAGATCTGAAAAAGAAGG
AAGAGATAGGAAAAAAGACAAACAGCATTTAAAAAGGAAAAAGGAGTCTGATTTACCATCAGCTATCCTC
CAAACCAGTGGTGTCTCTGAGTTCACTAAAAAGAGAAGCAAACTTGTGTTGCCTGCGCCTCAGATTTCAG
ATGCTGAACTCCAGGAAGTTGTCAAGGTAGGCCAGGCCAGTGAAGTCGCACGGCAGACGGCGGAGGAGTC
AGGAATAACAAACTCTGCTTCTAGCACTCTCCTGTCTGAGTACAATGTCACAAACAACAGCATCGCTCTG
AGAACACCACGGACACCAGCCTCTCAAGACAGGATTCTACAGGAAGCTCAGAACCTCATGGCCTTGACCA
ATGTGGACACTCCATTGAAAGGTGGGCTTAATACCCCACTGCATGAGAGTGACTTCTCTGGTGTGACCCC
ACAGCGGCAAGTTGTGCAGACTCCAAATACAGTTCTGTCTACCCCTTTCAGGACTCCTTCTAATGGAGCT
GAAGGGCTGACTCCCCGAAGTGGAACAACTCCTAAACCAGTCACTAATGCCACCCCAGGTAGAACACCAC
TTAGAGACAAGTTAAACATTAATCCAGAGGATGGAATGGCAGACTACAGTGACCCCTCTTACGTGAAGCA
GATGGAAAGAGAATCTCGTGAACATCTCCGTTTAGGGTTGTTAGGCCTCCCCGCACCTAAGAATGATTTT
GAAATTGTTCTGCCTGAAAATGCCGAGAAGGAACTAGAAGAACGTGAAATAGATGATACCTACATTGAAG
ATGCTGCTGATGTGGATGCTCGAAAGCAGGCCATCCGAGATGCTGAGCGTGTAAAGGAAATGAAACGAAT
GCATAAAGCTGTTCAGAAGGATCTGCCCAGGCCGTCTGAAGTAAATGAAACTATTTTAAGACCTTTAAAT
GTAGAACCACCTCTAACAGATTTACAGAAGAGTGAAGAACTGATCAAAAAAGAAATGATTACGATGCTTC
ATTATGATCTTCTACATCATCCCTACGAACCATCTGGAAATAAAAAAGGAAAAAATGTTGGGTTTGCTAC
CAACAATTCAGAGCACATTACCTATCTTGAGCACAGCCCTTATGAGAAGTTCTCCAAAGAAGATCTGAAA
AAGGCCCAGGATGCTCTGGTACAAGAGATGGAAGTGGTCAAACAAGGAATGAGCCATGGCGAACTCTCCA
GTGAAGCTTACAACCAGGTGTGGGAGGAATGCTACAGTCAAGTCCTCTATCTTCCTGCTCAGAGCCGCTA
CACTCGTGCTAATCTTGCTAGCAAAAAGGACAGAATTGAATCACTTGAAAAGAGACTTGAGATAAACAGG
GGTCACATGACAACAGAAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAGATTTTGCTTGGTGGTT
ACCAGTCTCGTGCTATGGGGCTCATGAAGCAGTTGAATGACTTATGGGACCAGATTGAGCAGGCTCACTT
GGAGCTACGCACTTTTGAAGAACTCAAGAAACATGAAGACTCTGCTATTCCCCGTAGGCTAGAGTGTCTA
AAAGAAGATGTGCAGCGGCAACAGGAACGAGAGAAAGAGCTTCAGCAGAGATACGCGGATTTGCTGATGG
AGAAAGAGACTTTACAGGCAAAGTTCTGA

Translation (802 aa):
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK
LLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPD
PIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVDY
NAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAIL
QTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIAL
RTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGA
EGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDF
EIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPLN
VEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNNSEHITYLEHSPYEKFSKEDLK
KAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSRYTRANLASKKDRIESLEKRLEINR
GHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECL
KEDVQRQQEREKELQQRYADLLMEKETLQAKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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