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Report for CCDS15079.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
15079.1 |
Public |
Mus musculus |
1 |
Stk11ip |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:71728](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:15079.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 15079.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000027414.15 |
ENSMUSP00000027414.9 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000027414.15](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000027414.9](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000027414](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000027414](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113553.1 |
ENSMUSP00000109182.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113553.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000109182.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113553](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000109182](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_027886.3 |
NP_082162.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_027886.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_082162.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_027886](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_082162](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_082162.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_082162.3 |
1072 |
Q3TAA7 |
1072 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 15079.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3219 nt): ATGACGACCGCTCCGCGGGATTCAGTAGTGTGGAAGCTGGCGGGACTTTTGCGGGAGTCGGGCGATGCGG TTCTCTCTGGCTGTAGCACACTGAGCCTGCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACT GTACCTGGGGCCATGGGGCCCAGGCCAGACAGGCTTTGTGGCTCTTCCCTCCCACCCTGCAGACTCACCC GTCATCCTCCAGCTTCAGTTCCTCTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCATATCC CTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGG AGTCCCTATCCACAGCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTGGAGTCCCTGGTTTGCAACAGA AGCATCCAGGCACTGGAGGAGCTCTTGTCAGCCTGTGGTGGGGATCTCTGCTCTGCCCTCCCCTGGCTAG CCTTGCTTTCTGCCGACTTCAGCTACAATGCGCTCAGGAGCTTAGACAGCTCCCTGCGTCTCCTGTCCGC TCTCCGCTTCCTCAACCTGAGCCACAATCATCTCCAGGACTGCAAAGGCTTCCTGATGGATTTATGTGAG CTGTACCATTTGGACATCTCCTATAACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGC TGGGGACTTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAAAGAACCTGCG GCATCTCGATGTGGCCTATAACCTTCTAGAAGGACACACAGAGCTTGCGCCATTATGGCTGCTGGCCGAG CTCCGTAAGCTCTATCTGGAAGGTAACCCTTTGTGGTTCCACCCTGCACACCGTGCAGCCACCGCCCAGT ACTTGTCACCACGGGCCAGGGATGCTGCTCATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAAGGA TCTTCAGCAAACTTCAGACTCTTCAGGGCTTGGTCCCGTGATCCAGCCTCTGTCCTGGCCAGTGGGGAGT ACCACTGAAACCTCAGGTGGCCCTGAGTTGAGTGATAGCCTCTCCTCAGGGGGCATTGTGGCCCAGGCCC CGCTTCGTAAGGTTAAGAGCCGAGTCCGTGTGAGGCGGGCTAGCATCTCTGAGCCCAGTGACACAGACCC AGAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTG GCCAGCTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCT CCCCTCTTAGCACCACCAAGACTCCTGCCCTTAGCACCCCTCCTCTGGATGTCCAGAACCTGGAGACTGT ATGCAGCCCTCCAGCCATAGAGGACGACACTAAGGAATCGCCAGAGAAGGTGTCAGAGGAAGGCAGGGTG GAGCCAGAGCCCCAGGAAGAAGAGAGGGAAGAACAGGATAAAGAAGAGGGATCGAGAGAGGACCTGGAGG AGGAGGAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCTTGCA GGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAA CTCCAAGCAGCTCGGACTCTGGAGCGGCTGGAGCTACAGAGTCTGGTGGCAGCTGAGCTAGAGTCCGAGA CTGAAACCCAAGGAGAACCAGTGTCTGAGGGCTCAGGTCCATTCCCCGGGGCTCCAGTTCTTGTTCTTCG CTTTTCTTACATTTGTCCCGACCGGCAGCTACGTCGATATGCTGTGCTGGAGCCGGAGGCCCGTGAAGCC GTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGG ACCCACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGG ACTGGAGAGTGATGAAGGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCCTGTTGTATGTCCAAACTGT GGGAGTGACCACGTGGTTCTCCTAGCTGTGTCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGC AGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAGCAGGCCTGATGGCATCCCACC TCAGACATCCATATCCCATGACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCTGGTTTTCGC TCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTCGAGGTGTTCAGTGACTCCGAGGAGGAGTTCCAGT GCTGTATCAAGGTGCCAGTGGTGTTAGCAGGCCACACGGAGGAGTTTCCGTGCCTTGTGGTTGTGTCTAA CCACATGCTTTACCTGTTGAAGGTGCTAGGGGCCATCTGCGGGCCTCCTGCTAGCTGGCTCCAGCCCACC CTGGCCATTGCTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGGAGT GGGCAGCTGGCACTGGCAGCTGTGTACTACTGCCCCGAGATGCTAGGCAGTGCCGAGCCTTCCTTGAGGA GCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTG ACCCCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGACCCTTCTGCAGAGGTGCCCCAGTTTTTCTACC TTCGGGCCTTCCTGGCTGAAGGCTCCTCTACCTGTCCTGTGTCCCTGTTGCTGACGTTGTCCACCCTGTA CCTATTAGATGAAGACCCTGGAGGGTCCCATGCAGAGTCTCCTCTCCCAGTGGTGTCTGATGAAACCTCA GAGCAGCCTGCTTCTCTGGGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGA GTTCTGTGCAGCTGTATCGCACAAGCCCTTTGGACCTGCGGCTGATCTTCTATGATGAGGTGTCTCGACT GGAGAGTTTCTGGGCCCTTCATGTTGTGTGTGGGGAGCAGCTGACAGCCCTGCTGGCCTGGATTCGGGAG CCCTGGGAAGAGTTGTTCTCCATTGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCTGGACCGATGA
Translation (1072 aa): MTTAPRDSVVWKLAGLLRESGDAVLSGCSTLSLLTATLQQLNRVFELYLGPWGPGQTGFVALPSHPADSP VILQLQFLFDVLQKTLSLKLVHIPGVGLPGPIKIFPFKSLRQLELRGVPIHSLCGLRGIYSQLESLVCNR SIQALEELLSACGGDLCSALPWLALLSADFSYNALRSLDSSLRLLSALRFLNLSHNHLQDCKGFLMDLCE LYHLDISYNHLRLVPRVGPSGAALGTLILRANELRSLQGLEQLKNLRHLDVAYNLLEGHTELAPLWLLAE LRKLYLEGNPLWFHPAHRAATAQYLSPRARDAAHGFLLDGKVLSLKDLQQTSDSSGLGPVIQPLSWPVGS TTETSGGPELSDSLSSGGIVAQAPLRKVKSRVRVRRASISEPSDTDPELRTLDPSPAGWFVQQHRELELL ASFRERFGCDWLQYRSHLETMGSSPLSTTKTPALSTPPLDVQNLETVCSPPAIEDDTKESPEKVSEEGRV EPEPQEEEREEQDKEEGSREDLEEEEEQEQKAVEAELCRPMLVCPLQGLGGVQGKECFLRVTSAHLFEVE LQAARTLERLELQSLVAAELESETETQGEPVSEGSGPFPGAPVLVLRFSYICPDRQLRRYAVLEPEAREA VQELLAVLTPFTSVKEQQPGANKDPQGARFQCLRCSCEFKPEESRLGLESDEGWKPLFQNTESPVVCPNC GSDHVVLLAVSGEVPNREQNQEEQSADSACDLADHGGCPSRPDGIPPQTSISHDRSSWSLSPSPGCSGFR SVDHRLRLFLDVEVFSDSEEEFQCCIKVPVVLAGHTEEFPCLVVVSNHMLYLLKVLGAICGPPASWLQPT LAIALQDLSGMELGLAGQSLRLEWAAGTGSCVLLPRDARQCRAFLEELTGVLQSLPRTQRNCISATEEEV TPQHRLWPLLGKDPSAEVPQFFYLRAFLAEGSSTCPVSLLLTLSTLYLLDEDPGGSHAESPLPVVSDETS EQPASLGPGPSLQVREQQPLSCLSSVQLYRTSPLDLRLIFYDEVSRLESFWALHVVCGEQLTALLAWIRE PWEELFSIGLRTVTQEALDLDR
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