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Report for CCDS48447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48447.1 Public Mus musculus 1 Cfap45 23 108 98 CCDS HistoryNCBI Gene:71870Re-query CCDS DB by CCDS ID:48447.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48447.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085894.11 ENSMUSP00000083057.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085894.11Link to Ensembl Protein Viewer:ENSMUSP00000083057.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085894Re-query CCDS DB by Protein ID:ENSMUSP00000083057
Original member Current member NCBI NM_027972.1 NP_082248.1 Accepted alive Link to Nucleotide Sequence:NM_027972.1Link to Protein Sequence:NP_082248.1Re-query CCDS DB by Nucleotide ID:NM_027972Re-query CCDS DB by Protein ID:NP_082248Link to BLAST:NP_082248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082248.1 551 Q9D9U9 551 100% 0 0

Chromosomal Locations for CCDS 48447.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172521179 172521181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172527790 172527915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172529810 172529952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172532081 172532225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172532531 172532701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172533946 172534124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172535211 172535340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172538479 172538625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172540487 172540600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172541185 172541378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172545092 172545316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172545675 172545753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCCACTAAGGCCAGGGGATGCCTCAAGCTCTGCTTCCACCGCTTCCAACCGGTCACGGACTAGGACTC
GCTATCGAACCAAAGCCATGAACTCTGAGGTAGACGAGAGCCTCTTTGGAGGTGTCAAGCCTTCATCCCA
GGGCAAGAGCGACAGCCCTATCGTGGTGATCCATGATAAACACGCTATCCGGAAAACTCTCAGTGCTCTG
GGCTTGGAGCACAAGACGGAGACGATCCAGCTCATCACTAGAGACATGGTCAGAGAACTCATTGTTCCCA
CAGAGGACCCCTCTGGGGAATCGCTAATCATCAGCCCCGAGGAGTTTGAGCGGATCAAATGGGCATCCCA
AGTCCTGACCAAAGAAGAACTGAATGCCAGAGAACAGGCCCTCAAGAAGGAGAAGGAAGGCATCTTGGAA
GCCGTCACAATTCGCAAGAAGATTATGAAGCAGAAGGAGATGACTTGGAACAATAACAAGAAGCTCAGTG
ACCTGGAGGAGGTGGCCAGGGAACGGGCCCAGAACCTCCTGCAGAGAGCCGACAAGCTCCGTATGGAGCA
GGAGGAGGAGCTCAAGGACATGAGCAAGATTATTCTGAATGCCAAGTGCCACGCAATCCGGGATGCCCAG
ATTCTGGAGAAGCAGCAGATACAAAAGGAATTGGATGAAGAGGAGAGGCGGTTGGATCACATGATGGAAA
TAGACCGGCGGGAATCCCTCCAAAGGCAGGAGGATCGGGAAAGGAAACGGAGGGAGGAGAGAGTACGGGG
AAAACGGCACATCGTGGAGCAGATAAAGAAGAACGAGGAGGAGAGATCGCTGCAGGCGGAGCACCGTGAA
CAGGAGAAGGAGCAGATGCTGGCCTACCTGGACCGGCTCCAGGAGGAGGATTTGCAGGATCTGGAACGAA
GACATCAGGAAAAACTGAAGATGCAAGCTGAAATTAAACGTATCAATGATGAAAACCAGAGACAGAAAGC
AGAGATGCTGGCACAGGAGAGACTGGCAGACCAGATGGTGATGGAATTTACCAAGAAGAAGATGGCTCGA
GAGGCAGAGTATGAAGCTGAGCAGGAGAAAATCCGGAGGGAGAAAGAGAAGGAGATCGCCCGCCTGAGGG
CCTTGCAGGAGAAGGCGCAGGATTATCAAGCAGAGCAGGATGCCTTGCGGGCCAAGCGCAACCAGGAGGT
TGCAGATCGAGAGTGGCGTCGAAAGGAAAAGGAAAATGCGCAGAAGAAGATAGAGACAGAGGAAAAGCTG
CGCAAAAGCCGGCTGGAGCAGGTGGCATTCAAGGAACACACGCTGGCCGTTCAGGTTCAGCGTGACCGAG
ATGAGTTCGAGAGGATCCTTCGGGCTCAGAGAGAGCAGATTGAGAGGGAGAAGCAGGAACAGGAGAAGAA
AGCCAAGGGGTGCCTCCAGCATGCCAACGAGCTCCGACGGCAGGTGCGTGAGAACCAGCAGAAACACGTG
CAGAACCGGCTCGCTACCTTCGAAGAGGGCCGCCGCCTCAAGGAGGAAGCTGAGAAGCGCCGCGAGCGCA
TCGAGGACATCAAGAAACAGAAGCTGGAAGAGCTGAGAGCCACCGGCCTTCCTGAGAAGTACTGCATCGA
AGTTGAGCGTAAAGCCAACATCCTGCCAGCCACTTCTGTTAACTGA

Translation (551 aa):
MPLRPGDASSSASTASNRSRTRTRYRTKAMNSEVDESLFGGVKPSSQGKSDSPIVVIHDKHAIRKTLSAL
GLEHKTETIQLITRDMVRELIVPTEDPSGESLIISPEEFERIKWASQVLTKEELNAREQALKKEKEGILE
AVTIRKKIMKQKEMTWNNNKKLSDLEEVARERAQNLLQRADKLRMEQEEELKDMSKIILNAKCHAIRDAQ
ILEKQQIQKELDEEERRLDHMMEIDRRESLQRQEDRERKRREERVRGKRHIVEQIKKNEEERSLQAEHRE
QEKEQMLAYLDRLQEEDLQDLERRHQEKLKMQAEIKRINDENQRQKAEMLAQERLADQMVMEFTKKKMAR
EAEYEAEQEKIRREKEKEIARLRALQEKAQDYQAEQDALRAKRNQEVADREWRRKEKENAQKKIETEEKL
RKSRLEQVAFKEHTLAVQVQRDRDEFERILRAQREQIEREKQEQEKKAKGCLQHANELRRQVRENQQKHV
QNRLATFEEGRRLKEEAEKRRERIEDIKKQKLEELRATGLPEKYCIEVERKANILPATSVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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