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Report for CCDS22246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22246.1 Public Mus musculus 8 Cldn23 23 108 98 CCDS HistoryNCBI Gene:71908Re-query CCDS DB by CCDS ID:22246.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060128.6 ENSMUSP00000049725.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060128.6Link to Ensembl Protein Viewer:ENSMUSP00000049725.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060128Re-query CCDS DB by Protein ID:ENSMUSP00000049725
Original member Current member NCBI NM_027998.4 NP_082274.1 Accepted alive Link to Nucleotide Sequence:NM_027998.4Link to Protein Sequence:NP_082274.1Re-query CCDS DB by Nucleotide ID:NM_027998Re-query CCDS DB by Protein ID:NP_082274Link to BLAST:NP_082274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082274.1 296 Q9D7D7 296 100% 0 0

Chromosomal Locations for CCDS 22246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 35825442 35826332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCGGACGCCGGTGGTGATGACGCTGGGCATGGTGCTCACGCCCTGCGGGTTGCTGCTTAATCTTGTCA
GTACACTGGCCCCGGGCTGGCGGCTGGTGAAGGGCTTTCTGGACCAGCCAGTGGACGTGGTGCTGTACCA
GGGGCTGTGGGACATATGTCGCGAGCAGAGCAGTCGCGAACGCGAGTGCGGCCAGCCCGACGAGTGGAAC
TACTTCCAGACCCAGCCTGTGCAGGTGGCCCGGGGACTCATGATCACGTCACTGGCCACTACCGCCCTAG
GGCTGCTGCTGGCTTCCCTCGGTGTGCGCTGTTGGCAAGATGAGCCCCACTACGGGCTAGCGGGCCTCTC
TGGCGTGGTGTTTTTCGTCGCTGGCCTCTTCAGCCTCATCCCGGTCTCCTGGTATAACCACTTCTTGTCA
GATCCCGACGTCCTGGCCGCCCCGAGCTCGCCGGTCACGGTGCAGGTCAGCTACAGCCTGGTGCTGGGCT
ACCTAGGCAGCTGCCTGCTGCTTCTGGGCGGCTTCTCTCTGGCGCTCAGCTTTGCGCCCTGGTGTGAAGA
GCGTTGTCGCCGCTGTCGCAAGGCGCCCCCAGCAGGCCCGCGCCGCAGCAGCATCAGCACCGTCTACGTG
GACTGGCCGGAACCAGCGCTCACACCTGCCATCAAGTACTACAGCGACGGACAGCATCGGCCTCCTCCCA
CCGCAGAGCACAGGGACACCAGCAAGCTCAAGGTTGGATTCCCGATGCCACGACCGCCACCCAAGTCCTA
CACCAACCCGATGGATGTGCTTGAGGGAGAAGAAAAGAAGACAGCCACCTCCCAAGGTGGTTCCTCCTCT
CGCAGCACTCGGCCCTGCCAAAATTCGCTGCCCTGTGACTCCGACCTGTAG

Translation (296 aa):
MRTPVVMTLGMVLTPCGLLLNLVSTLAPGWRLVKGFLDQPVDVVLYQGLWDICREQSSRERECGQPDEWN
YFQTQPVQVARGLMITSLATTALGLLLASLGVRCWQDEPHYGLAGLSGVVFFVAGLFSLIPVSWYNHFLS
DPDVLAAPSSPVTVQVSYSLVLGYLGSCLLLLGGFSLALSFAPWCEERCRRCRKAPPAGPRRSSISTVYV
DWPEPALTPAIKYYSDGQHRPPPTAEHRDTSKLKVGFPMPRPPPKSYTNPMDVLEGEEKKTATSQGGSSS
RSTRPCQNSLPCDSDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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