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Report for CCDS28360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28360.1 Public Mus musculus 16 Ripk4 23 108 98 CCDS HistoryNCBI Gene:72388Re-query CCDS DB by CCDS ID:28360.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019386.9 ENSMUSP00000019386.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019386.9Link to Ensembl Protein Viewer:ENSMUSP00000019386.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019386Re-query CCDS DB by Protein ID:ENSMUSP00000019386
Original member Current member NCBI NM_023663.7 NP_076152.2 Accepted alive Link to Nucleotide Sequence:NM_023663.7Link to Protein Sequence:NP_076152.2Re-query CCDS DB by Nucleotide ID:NM_023663Re-query CCDS DB by Protein ID:NP_076152Link to BLAST:NP_076152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076152.2 786 Q9ERK0 786 100% 0 0

Chromosomal Locations for CCDS 28360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97743085 97744244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97745860 97746124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97747293 97747396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97748023 97748181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97750093 97750142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97751494 97751642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97755068 97755359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97763528 97763709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGAGGGCGAGGGCCGGGGCCGGTGGGCTCTGGGGCTGCTGCGCACCTTCGACGCCGGCGAATTCGCAG
GCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTG
GCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAACGAATGGAGCTCCTGGAGGAAGCT
AAGAAGATGGAGATGGCCAAGTTCCGATACATTCTACCTGTGTACGGCATATGCCAGGAACCTGTCGGCT
TGGTCATGGAGTACATGGAGACAGGCTCCCTGGAGAAGCTGCTGGCCTCAGAGCCATTGCCTTGGGACCT
GCGCTTTCGCATCGTGCACGAGACAGCCGTGGGCATGAACTTCCTGCATTGCATGTCTCCGCCACTGCTG
CACCTAGACCTGAAGCCAGCGAACATCCTGCTGGATGCCCACTACCATGTCAAGATTTCTGACTTTGGGC
TGGCCAAGTGCAATGGCATGTCCCACTCTCATGACCTCAGCATGGATGGCCTGTTTGGTACAATCGCTTA
CCTCCCTCCAGAGCGAATTCGTGAGAAGAGCCGCTTGTTTGACACCAAACATGATGTATACAGCTTCGCC
ATTGTGATCTGGGGTGTGCTTACACAGAAGAAGCCATTTGCAGATGAAAAGAACATCCTACACATCATGA
TGAAAGTGGTAAAGGGCCACCGCCCAGAGCTGCCACCCATCTGCAGACCCCGGCCGCGTGCCTGTGCCAG
CCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACC
TCTGAAACAGAAGACCTTTGTGAGAAGCCTGATGAGGAGGTGAAAGACCTGGCTCATGAGCCAGGCGAGA
AAAGCTCTCTAGAGTCCAAGAGTGAGGCCAGGCCCGAGTCCTCACGCCTCAAGCGCGCCTCTGCTCCCCC
CTTCGATAACGACTGCAGTCTCTCCGAGTTGCTGTCACAGTTGGACTCTGGGATCTCCCAGACTCTTGAA
GGCCCCGAAGAGCTCAGCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCT
CGGGGGTGTCCTCAGTGGACTCAGCCTTTTCCTCCAGAGGATCGCTGTCACTGTCTTTTGAGCGGGAAGC
TTCAACAGGCGACCTGGGCCCCACAGACATCCAGAAGAAGAAGCTAGTGGATGCCATCATATCAGGGGAC
ACCAGCAGGCTGATGAAGATCCTACAGCCCCAAGATGTGGACTTGGTTCTAGACAGCAGTGCCAGCCTGC
TGCACCTGGCTGTGGAGGCCGGACAGGAGGAGTGTGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAA
CCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGAGCGGAAGGGACGTGGAATTGTGGAG
CTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTTTGCAG
CCCAGAATGGGGATGAGGCCAGCACAAGGCTGCTGCTAGAGAAGAATGCTTCTGTCAATGAGGTGGACTT
TGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCTCCGC
CGTGGTGTGGATGTGGGCCTGCAGGGAAAGGATGCCTGGTTGCCTCTGCACTATGCTGCCTGGCAGGGCC
ACCTTCCCATTGTTAAGCTGCTAGCCAAGCAGCCTGGGGTGAGTGTGAATGCCCAGACACTAGACGGGAG
GACACCCCTGCACCTGGCTGCTCAGAGGGGGCATTACCGTGTGGCTCGCATTCTCATTGACCTGTGCTCT
GATGTTAACATCTGCAGCCTACAGGCACAGACACCTCTGCATGTTGCTGCAGAGACTGGACACACTAGTA
CTGCCAGGCTACTCTTGCATCGTGGTGCTGGCAAGGAGGCTTTGACCTCAGAGGGCTATACTGCCTTGCA
CCTGGCAGCCCAGAATGGACACCTGGCTACTGTCAAGCTGCTCATAGAGGAGAAGGCTGATGTGATGGCT
CGGGGTCCCCTGAATCAGACAGCACTGCACCTGGCTGCTGCCCGTGGACACTCAGAGGTGGTAGAAGAGC
TGGTCAGTGCTGACCTCATTGACCTGTCTGATGAGCAGGGCCTCAGCGCACTGCACCTGGCTGCTCAGGG
CAGGCATTCACAGACTGTGGAGACACTGCTCAAACATGGAGCACACATCAACTTGCAGAGTCTCAAGTTC
CAAGGAGGCCAGAGCTCTGCTGCCACGTTGCTCCGACGCAGCAAGACCTAG

Translation (786 aa):
MEGEGRGRWALGLLRTFDAGEFAGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEA
KKMEMAKFRYILPVYGICQEPVGLVMEYMETGSLEKLLASEPLPWDLRFRIVHETAVGMNFLHCMSPPLL
HLDLKPANILLDAHYHVKISDFGLAKCNGMSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFA
IVIWGVLTQKKPFADEKNILHIMMKVVKGHRPELPPICRPRPRACASLIGLMQRCWHADPQVRPTFQEIT
SETEDLCEKPDEEVKDLAHEPGEKSSLESKSEARPESSRLKRASAPPFDNDCSLSELLSQLDSGISQTLE
GPEELSRSSSECKLPSSSSGKRLSGVSSVDSAFSSRGSLSLSFEREASTGDLGPTDIQKKKLVDAIISGD
TSRLMKILQPQDVDLVLDSSASLLHLAVEAGQEECVKWLLLNNANPNLTNRKGSTPLHMAVERKGRGIVE
LLLARKTSVNAKDEDQWTALHFAAQNGDEASTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRTLLR
RGVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCS
DVNICSLQAQTPLHVAAETGHTSTARLLLHRGAGKEALTSEGYTALHLAAQNGHLATVKLLIEEKADVMA
RGPLNQTALHLAAARGHSEVVEELVSADLIDLSDEQGLSALHLAAQGRHSQTVETLLKHGAHINLQSLKF
QGGQSSAATLLRRSKT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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