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Report for CCDS16187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16187.1 Public Mus musculus 2 Selenoh 23 108 98 CCDS HistoryNCBI Gene:72657Re-query CCDS DB by CCDS ID:16187.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 16187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102646.2 ENSMUSP00000099706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102646.2Link to Ensembl Protein Viewer:ENSMUSP00000099706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102646Re-query CCDS DB by Protein ID:ENSMUSP00000099706
Original member Current member EBI ENSMUST00000102647.9 ENSMUSP00000099707.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102647.9Link to Ensembl Protein Viewer:ENSMUSP00000099707.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102647Re-query CCDS DB by Protein ID:ENSMUSP00000099707
Original member Current member EBI ENSMUST00000117299.8 ENSMUSP00000112635.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117299.8Link to Ensembl Protein Viewer:ENSMUSP00000112635.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117299Re-query CCDS DB by Protein ID:ENSMUSP00000112635
Original member Current member NCBI NM_001033166.3 NP_001028338.1 Accepted alive Link to Nucleotide Sequence:NM_001033166.3Link to Protein Sequence:NP_001028338.1Re-query CCDS DB by Nucleotide ID:NM_001033166Re-query CCDS DB by Protein ID:NP_001028338Link to BLAST:NP_001028338.1
Original member Current member NCBI NM_001037279.2 NP_001032356.1 Accepted alive Link to Nucleotide Sequence:NM_001037279.2Link to Protein Sequence:NP_001032356.1Re-query CCDS DB by Nucleotide ID:NM_001037279Re-query CCDS DB by Protein ID:NP_001032356Link to BLAST:NP_001032356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028338.1 116 Q3UQA7 116 100% 0 0
NP_001032356.1 116 Q3UQA7 116 100% 0 0

Chromosomal Locations for CCDS 16187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84670016 84670116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84670245 84670390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84670483 84670586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 38

Nucleotide Sequence (351 nt):
ATGGCCCCCCACGGAAGAAAGCGTAAGGCGGGGGCCGCGCCTATGGAGACGGTGGACAAGCGCGAGAAAC
TGGCGGAGGGCGCGACCGTGGTCATTGAGCATTGTACGAGCTGACGCGTGTACGGCCGCCATGCTGCTGC
CTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGG
GGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACAACAGCCGTGTTGAACTCTGGACTGGTATTAAGAAGG
GCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGGTGGTTGAAGAATTGAAGAAGTACCTTTCATA
A

Translation (116 aa):
MAPHGRKRKAGAAPMETVDKREKLAEGATVVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRR
GSFEVTLLRSDNSRVELWTGIKKGPPRKLKFPEPQEVVEELKKYLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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