NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25958.1 Public Mus musculus 12 Tmx1 23 108 98 CCDS HistoryNCBI Gene:72736Re-query CCDS DB by CCDS ID:25958.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021471.12 ENSMUSP00000021471.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021471.12Link to Ensembl Protein Viewer:ENSMUSP00000021471.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021471Re-query CCDS DB by Protein ID:ENSMUSP00000021471
Original member Current member NCBI NM_028339.1 NP_082615.1 Accepted alive Link to Nucleotide Sequence:NM_028339.1Link to Protein Sequence:NP_082615.1Re-query CCDS DB by Nucleotide ID:NM_028339Re-query CCDS DB by Protein ID:NP_082615Link to BLAST:NP_082615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082615.1 278 Q8VBT0 278 100% 0 0

Chromosomal Locations for CCDS 25958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 70453169 70453320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70456012 70456127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70456581 70456626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70458779 70458907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70460345 70460390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70460479 70460580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70464400 70464466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70465978 70466156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGCGCACTTGGGGCGTCTTATGGTTCCCCTGGCAGCTCTGGTCCTGCTGCTCTGGGCGGTCCCTGGGG
CCCACGGACGGCGGAATAACGTGCGCGTCCTCACCGATGAGAACTGGACGTCGTTGCTGGAAGGAGAGTG
GATGATAGAATTTTATGCTCCCTGGTGTCCTGCTTGTCAGAATCTTCAGCCAGAATGGGAAAGTTTTGCC
GAGTGGGGAGAAGATCTTGAGGTGAAAGTTGCAAAAGTGGATGTCACAGAGCAGACAGGACTAAGTGGAC
GGTTTATCATAACTGCTCTTCCTTCTATTTATCATTGTAAAGATGGTGAATTTAGGCGCTATGTGGGCCC
AAGGACTAAGAAGGACTTCATAAACTTCGTAAGTGATAAAGAATGGAAGAATATTGAACCTATATCATCA
TGGTTTGGTCCAAGTTCTGTTCTGATGACTATGATGTCAGCACTTTTTCAACTCTCTGTGTACATCAGGA
CTAGCCACAGCTATTTTGTTCATGACCTTGGAATACCAGCGTGGGGTTCATACTTGGTTTTTGCTTTTGC
CACAGTACTCTCAGGACTGCTGCTGGGACTTTGTATGATATTTGTAGCAGATTGCCTTTGCCCTTCAAAA
AGACGCAAACCACAGCAACAGTATGCAAAAAAAACATCACCAGAATTTTCTCAACCTCTGAAAAAAGTGG
AGGAAGAGCAGGAGGCTGATGAAGAAGATGTTTCAGAAGAGGAGGCAGAAGATAGAGAGGGAGCAAGCAA
AGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACATCCTAA

Translation (278 aa):
MAHLGRLMVPLAALVLLLWAVPGAHGRRNNVRVLTDENWTSLLEGEWMIEFYAPWCPACQNLQPEWESFA
EWGEDLEVKVAKVDVTEQTGLSGRFIITALPSIYHCKDGEFRRYVGPRTKKDFINFVSDKEWKNIEPISS
WFGPSSVLMTMMSALFQLSVYIRTSHSYFVHDLGIPAWGSYLVFAFATVLSGLLLGLCMIFVADCLCPSK
RRKPQQQYAKKTSPEFSQPLKKVEEEQEADEEDVSEEEAEDREGASKATSQSSIRQRCVGLPSATDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH