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Report for CCDS43552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43552.1 Public Homo sapiens 7 RSPH10B2 24 110 108 CCDS HistoryNCBI Gene:728194Re-query CCDS DB by CCDS ID:43552.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297186.7 ENSP00000297186.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297186.7Link to Ensembl Protein Viewer:ENSP00000297186.3Re-query CCDS DB by Nucleotide ID:ENST00000297186Re-query CCDS DB by Protein ID:ENSP00000297186
Original member Current member EBI ENST00000403107.5 ENSP00000384766.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403107.5Link to Ensembl Protein Viewer:ENSP00000384766.1Re-query CCDS DB by Nucleotide ID:ENST00000403107Re-query CCDS DB by Protein ID:ENSP00000384766
Original member Current member EBI ENST00000404077.6 ENSP00000386102.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404077.6Link to Ensembl Protein Viewer:ENSP00000386102.1Re-query CCDS DB by Nucleotide ID:ENST00000404077Re-query CCDS DB by Protein ID:ENSP00000386102
Original member Current member NCBI NM_001099697.2 NP_001093167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099697.2Link to Protein Sequence:NP_001093167.1Re-query CCDS DB by Nucleotide ID:NM_001099697Re-query CCDS DB by Protein ID:NP_001093167Link to BLAST:NP_001093167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093167.1 870 B2RC85-1 870 100% 0 0

Chromosomal Locations for CCDS 43552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6757678 6757931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6759084 6759159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6760226 6760294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6763928 6764101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6765706 6765791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6766757 6766877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6768590 6768766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6771547 6771691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6773350 6773471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6776357 6776546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6779610 6779724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6780809 6780888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6781328 6781476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6785949 6786056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6786878 6787021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6789631 6789759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6791904 6791997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6796568 6796766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6798363 6798543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGTGAAAGAAAAGAAAAAAGCAGACAAAAAAGGGGAGAAGTCTGCCCGCTCTCCCTCATCTCTCTCTG
ATAATCTAGACTTTTCCAAACAAGATGGCAACACCACTAGGCAAGAGATGTCCCCAGCTGGTGTCCCATT
GCTGGGAATGCAGCTCAACGAAGTGAAACCCAAAAAAGACCGCCAAAACGTTCAGCAGAACGAAGATGCC
AGCCAATACGAAGAGTCCATTCTGACCAAACTCATAGTGGAAAGCTATGAAGGGGAAAAGGTTCGTGGGC
TGTATGAGGGAGAAGGCTTCGCAGCCTTTCAAGGCGGTTGTACCTATCGTGGTATGTTTTCAGAAGGACT
CATGCATGGACAGGGGACTTATATTTGGGCCGATGGATTAAAATATGAGGGCGACTTTGTGAAGAATGTC
CCGATGAACCACGGCGTGTACACGTGGCCGGACGGCAGCATGTATGAAGGCGAAGTGGTCAACGGCATGA
GGAACGGATTCGGGATGTTCAAGTGCAGCACCCAGCCTGTGTCCTACATCGGCCACTGGTGCAATGGCAA
GCGGCACGGGAAGGGCTCCATTTATTACAATCAAGAGGGTACGTGTTGGTACGAGGGAGACTGGGTACAA
AACATCAAAAAGGGCTGGGGAATAAGATGTTATAAATCTGGAAATATATACGAAGGCCAGTGGGAAGACA
ACATGCGCCACGGGGAGGGGAGGATGAGGTGGCTGACCACCAACGAAGAGTACACCGGGCGGTGGGAGAG
GGGCATCCAGAATGGCTTTGGAACACACACATGGTTTCTAAAGAGAATCCGCAGTTCCCAGTATCCTTTG
AGAAATGAATACATAGGGGAGTTTGTAAATGGATATCGTCACGGACGTGGCAAGTTTTATTATGCCAGTG
GAGCCATGTATGATGGAGAATGGGTTTCCAATAAGAAACATGGCATGGGCCGATTAACTTTCAAGAACGG
GCGTGTGTACGAAGGCGCATTCTCCAATGACCACATAGCTGGGTTTCCGGATCTTGAAGTTGAATTCATC
AGCTGCCTGGACCTGTCTTCAGGAGTTGCCCCAAGACTGTCCAGGAGCGCCGAACTGATCAGAAAGCTTG
ATGGCAGTGAAAGTCATTCTGTGTTGGGATCGAGCATTGAGCTGGATCTAAATTTGCTCCTGGACATGTA
CCCTGAGACAGTCCAACCTGAAGAAAAGAAGCAGGTGGAATATGCCGTCTTAAGAAATATTACAGAATTA
AGAAGAATTTACAGCTTTTACAGCAGCCTGGGATGCGGCCACTCTCTGGATAATACCTTTCTGATGACAA
AGCTTCACTTCTGGAGATTTCTAAAAGATTGCAAATTTCATCACCACAAACTAACTCTTGCTGATATGGA
CAGGATATTAAGTGCCAATAATGACATACCAGTTGAAGAAATCCATTCTCCATTTACAACAATACTTTTG
AGAACATTTTTGAATTACCTCCTGCATTTGGCGTACCACATTTATCATGAAGAATTCCAAAAGAGAAGCC
CATCCCTCTTCTTGTGTTTTACAAAACTGATGACCGAGAACATTCGTCCAAATGCCTGCCAGATAAAAGG
CAATTTATTCCGTGAGCAACAGCGGACGCTCTACTCTATGAGTTACATGAATAAGTGCTGGGAGATTTAT
CTCGCTTACTGCAGACCCAGTGCAGCGCCTCCCCACGAGCCTACGATGAAGATGAGACACTTCCTCTGGA
TGCTGAAAGACTTTAAAATGATAAATAAAGAATTAACAGCAGCTACATTTATGGAGGTCATAGCAGAGGA
TAATCGTTTCATATATGATGGAATTGACAGCAACTTTGAACCTGAGCTGGTTTTCCTGGAATTCTTTGAA
GCTCTCTTAAGCTTTGCATTCATCTGTGTTACTGACCAAATGACTAAATCCTATACAAATGTTCCAGCTG
ATGATGTGTCTGGAAATAAACATGAAACTATTTATACAATACTAAATCAGGACGCCCAGAACAAGAGTCC
CAGCGCGGTCATGAGCCACGAATCGGATGCTGCTCACTCTGACAGTGCCAGGTCATCTTCCAGCAAGTTA
GAACTCTCGCCTGATGTTAACAAAATAAGGAAATCAGAGCCCAAGATCAAGAAGTCTGTAAGTCATGAAA
GAGTCTCCAAAATGAATTTTAAATTGACTGGAAAAGGGATCACCTTTTTCTCATCTGAGAGCAAGAAATA
TGAGAGACCCAAGGATGATCGAGAGGAAGAGTTCAACACGTGGGTCAATAATACGTACGTCTTCTTTGTG
AACACGCTCTTTCATGCGTATAAACGTGAAGAAGCTATCAAGGAGAAAATAAGGGCAGACAGGTTACGTA
GCACAGCACAGGCCCAGCAGCGGAAGATGGAAGATGACGAACTGGAAGCAAGGCTGAACATCTTTATCTT
GAGAGAGGAAGAGGCCAAGAGACATGACTATGAGGTGGACATCACAGTGCTCAAGGAGCCGGCAGACGTG
TCATCCTCTCACCTCATACTGGACCCTCCCAAGGAGGATGTGACCGTGTCCCCATCCAGCAAGACCATCA
CCAGCAAGAAGAAGAAAAAGTAG

Translation (870 aa):
MVKEKKKADKKGEKSARSPSSLSDNLDFSKQDGNTTRQEMSPAGVPLLGMQLNEVKPKKDRQNVQQNEDA
SQYEESILTKLIVESYEGEKVRGLYEGEGFAAFQGGCTYRGMFSEGLMHGQGTYIWADGLKYEGDFVKNV
PMNHGVYTWPDGSMYEGEVVNGMRNGFGMFKCSTQPVSYIGHWCNGKRHGKGSIYYNQEGTCWYEGDWVQ
NIKKGWGIRCYKSGNIYEGQWEDNMRHGEGRMRWLTTNEEYTGRWERGIQNGFGTHTWFLKRIRSSQYPL
RNEYIGEFVNGYRHGRGKFYYASGAMYDGEWVSNKKHGMGRLTFKNGRVYEGAFSNDHIAGFPDLEVEFI
SCLDLSSGVAPRLSRSAELIRKLDGSESHSVLGSSIELDLNLLLDMYPETVQPEEKKQVEYAVLRNITEL
RRIYSFYSSLGCGHSLDNTFLMTKLHFWRFLKDCKFHHHKLTLADMDRILSANNDIPVEEIHSPFTTILL
RTFLNYLLHLAYHIYHEEFQKRSPSLFLCFTKLMTENIRPNACQIKGNLFREQQRTLYSMSYMNKCWEIY
LAYCRPSAAPPHEPTMKMRHFLWMLKDFKMINKELTAATFMEVIAEDNRFIYDGIDSNFEPELVFLEFFE
ALLSFAFICVTDQMTKSYTNVPADDVSGNKHETIYTILNQDAQNKSPSAVMSHESDAAHSDSARSSSSKL
ELSPDVNKIRKSEPKIKKSVSHERVSKMNFKLTGKGITFFSSESKKYERPKDDREEEFNTWVNNTYVFFV
NTLFHAYKREEAIKEKIRADRLRSTAQAQQRKMEDDELEARLNIFILREEEAKRHDYEVDITVLKEPADV
SSSHLILDPPKEDVTVSPSSKTITSKKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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